Selenomonas noxia ATCC 43541

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas noxia

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2020 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4S6T5|D4S6T5_9FIRM 50S ribosomal protein L7/L12 OS=Selenomonas noxia ATCC 43541 OX=585503 GN=rplL PE=3 SV=1
MM1 pKa = 7.83PLLKK5 pKa = 10.57EE6 pKa = 4.13EE7 pKa = 4.34NTMGMSGYY15 pKa = 10.47YY16 pKa = 9.66IAVDD20 pKa = 3.61DD21 pKa = 5.54ALLQDD26 pKa = 4.82VIDD29 pKa = 4.62GAQSVLGIDD38 pKa = 3.6PSGEE42 pKa = 3.85KK43 pKa = 9.72TLDD46 pKa = 3.57IDD48 pKa = 4.83KK49 pKa = 10.17SWQGIHH55 pKa = 6.16QLLCGEE61 pKa = 4.6PFEE64 pKa = 5.55GDD66 pKa = 3.16PPMGYY71 pKa = 9.63VVPLQYY77 pKa = 11.08DD78 pKa = 3.27NRR80 pKa = 11.84IEE82 pKa = 4.19SEE84 pKa = 4.02SDD86 pKa = 3.03FGAFYY91 pKa = 9.35ITPSEE96 pKa = 4.27VKK98 pKa = 9.77EE99 pKa = 4.0AADD102 pKa = 4.05FLSTLDD108 pKa = 4.5DD109 pKa = 4.27DD110 pKa = 5.32ALRR113 pKa = 11.84DD114 pKa = 3.69MYY116 pKa = 11.31GFDD119 pKa = 3.92SMRR122 pKa = 11.84GDD124 pKa = 3.21GTYY127 pKa = 10.42PITAEE132 pKa = 4.02DD133 pKa = 3.99DD134 pKa = 3.7AEE136 pKa = 4.03EE137 pKa = 4.81FYY139 pKa = 11.15SYY141 pKa = 10.86LHH143 pKa = 6.75SYY145 pKa = 10.37LLEE148 pKa = 4.82LISYY152 pKa = 7.47FKK154 pKa = 11.09KK155 pKa = 10.42NAEE158 pKa = 3.93EE159 pKa = 4.16GKK161 pKa = 10.64AVIFYY166 pKa = 10.58ILL168 pKa = 3.5

Molecular weight: 18.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4S3V5|D4S3V5_9FIRM Uncharacterized protein OS=Selenomonas noxia ATCC 43541 OX=585503 GN=HMPREF7545_0283 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNHH10 pKa = 5.38WRR12 pKa = 11.84KK13 pKa = 7.47KK14 pKa = 6.28THH16 pKa = 5.76GFRR19 pKa = 11.84EE20 pKa = 3.92RR21 pKa = 11.84MKK23 pKa = 10.1TKK25 pKa = 10.35GGRR28 pKa = 11.84LVLKK32 pKa = 10.33RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.87KK41 pKa = 10.62LSAA44 pKa = 4.03

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2020

0

2020

628603

39

3482

311.2

34.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.823 ± 0.075

1.07 ± 0.021

5.57 ± 0.049

6.806 ± 0.061

3.803 ± 0.04

7.828 ± 0.054

2.229 ± 0.024

6.541 ± 0.052

4.422 ± 0.055

9.36 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.988 ± 0.031

3.233 ± 0.052

3.951 ± 0.033

3.021 ± 0.032

6.343 ± 0.062

5.208 ± 0.047

5.533 ± 0.053

7.064 ± 0.056

0.888 ± 0.02

3.321 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski