Papio ursinus cytomegalovirus

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Betaherpesvirinae; Cytomegalovirus; Cercopithecine betaherpesvirus 5

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 84 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F7G9A4|A0A0F7G9A4_SCMVC Envelope glycoprotein M OS=Papio ursinus cytomegalovirus OX=1667587 GN=gM PE=3 SV=1
MM1 pKa = 6.98QEE3 pKa = 4.3AMKK6 pKa = 9.44TWVLLVALFAITRR19 pKa = 11.84DD20 pKa = 3.74SACNNTSTASSSSTSSNTVTSSKK43 pKa = 11.27ANNTTSISSSTVSSTSPSGSSSATSNTTKK72 pKa = 10.2ATTSPATTNLSSASPASSPATATTNSTTTTPTPTSSKK109 pKa = 8.64NTSAGSSTPTNTSNKK124 pKa = 8.36TSPPASNTSTPSATKK139 pKa = 8.93TANSTTTNNSAAEE152 pKa = 4.13NTTNITPTFSTEE164 pKa = 3.67NVTVDD169 pKa = 3.38SNFTTGYY176 pKa = 10.24PNDD179 pKa = 4.08TFNATTDD186 pKa = 3.69PYY188 pKa = 11.3EE189 pKa = 3.99VMQIVDD195 pKa = 4.58LCNATISIIFTDD207 pKa = 3.44SDD209 pKa = 3.94EE210 pKa = 4.28EE211 pKa = 4.5TEE213 pKa = 4.32EE214 pKa = 4.37SDD216 pKa = 3.56EE217 pKa = 4.25QSSEE221 pKa = 4.01EE222 pKa = 3.98QQSFDD227 pKa = 4.84SIDD230 pKa = 3.71DD231 pKa = 3.58NTYY234 pKa = 9.62YY235 pKa = 10.16PVNPSYY241 pKa = 11.57SLLSDD246 pKa = 3.98SDD248 pKa = 3.77DD249 pKa = 3.57VMYY252 pKa = 9.61FYY254 pKa = 11.51ANCEE258 pKa = 4.18RR259 pKa = 11.84NDD261 pKa = 3.82TLSNTSCNYY270 pKa = 8.25TNQRR274 pKa = 11.84LTSWSLVSSVSFYY287 pKa = 10.52PAEE290 pKa = 3.91LTNCNKK296 pKa = 9.31PVAVIEE302 pKa = 4.33VGNSSLVVSAEE313 pKa = 3.94ATSNLVDD320 pKa = 4.94GIYY323 pKa = 10.47KK324 pKa = 10.24VLGVPDD330 pKa = 4.63LNSSFLKK337 pKa = 10.55EE338 pKa = 3.63LAKK341 pKa = 10.32FQQLIIQGQNKK352 pKa = 7.72PQKK355 pKa = 10.32

Molecular weight: 37.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F7G9M3|A0A0F7G9M3_SCMVC UL74A OS=Papio ursinus cytomegalovirus OX=1667587 PE=4 SV=1
MM1 pKa = 6.56WHH3 pKa = 6.75AAILLYY9 pKa = 10.65EE10 pKa = 4.2PTLTASAALALGNAISAIHH29 pKa = 6.31HH30 pKa = 6.11RR31 pKa = 11.84FSMLCARR38 pKa = 11.84CRR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84PATEE46 pKa = 3.64SDD48 pKa = 3.81SNNARR53 pKa = 11.84SSQSEE58 pKa = 3.77ASQRR62 pKa = 11.84RR63 pKa = 11.84QTRR66 pKa = 11.84EE67 pKa = 3.68NQKK70 pKa = 10.4EE71 pKa = 3.87PSPKK75 pKa = 10.26NNNTSLVGRR84 pKa = 11.84ALVIIGQQLIAANLGACPPPVTLFRR109 pKa = 5.98

Molecular weight: 11.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

84

0

84

36678

56

2183

436.6

49.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.271 ± 0.247

2.576 ± 0.153

5.128 ± 0.189

5.314 ± 0.18

4.313 ± 0.129

4.681 ± 0.206

3.065 ± 0.126

4.774 ± 0.225

3.757 ± 0.227

10.333 ± 0.24

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.487 ± 0.105

3.915 ± 0.185

5.466 ± 0.224

3.888 ± 0.2

6.68 ± 0.261

7.539 ± 0.265

6.584 ± 0.287

7.271 ± 0.189

1.279 ± 0.093

3.678 ± 0.118
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski