Trypanosoma congolense (strain IL3000)

Taxonomy: cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense

Average proteome isoelectric point is 7.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5906 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9WIH8|F9WIH8_TRYCI WGS project CAEQ00000000 data annotated contig 794 OS=Trypanosoma congolense (strain IL3000) OX=1068625 GN=TCIL3000_0_19740 PE=4 SV=1
MM1 pKa = 7.67SLRR4 pKa = 11.84AQWNMKK10 pKa = 9.63EE11 pKa = 4.25GSFAGNAGGIDD22 pKa = 3.71SPNDD26 pKa = 3.27CSSASGIMDD35 pKa = 4.66GLHH38 pKa = 7.33LIPEE42 pKa = 4.23QGVVDD47 pKa = 4.26ALQPVAHH54 pKa = 7.34AGQAEE59 pKa = 4.01NSADD63 pKa = 3.48GALSFDD69 pKa = 5.2FIFHH73 pKa = 6.73SMQPNDD79 pKa = 3.18VNRR82 pKa = 11.84DD83 pKa = 3.22VNANCVASEE92 pKa = 4.11GDD94 pKa = 3.71PSRR97 pKa = 11.84STAFGGFCFDD107 pKa = 4.07YY108 pKa = 10.84ACSDD112 pKa = 3.89GAWPEE117 pKa = 4.07GNAVATDD124 pKa = 3.96AAAMGVGINNPTTQEE139 pKa = 4.07APFHH143 pKa = 6.59LLLTDD148 pKa = 4.6DD149 pKa = 4.57PVVPCDD155 pKa = 3.72EE156 pKa = 4.64PLHH159 pKa = 6.24PGFPKK164 pKa = 10.67ASS166 pKa = 3.39

Molecular weight: 17.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9WCD2|F9WCD2_TRYCI WGS project CAEQ00000000 data annotated contig 2213 OS=Trypanosoma congolense (strain IL3000) OX=1068625 GN=TCIL3000_0_54940 PE=4 SV=1
MM1 pKa = 7.91APPFIPPHH9 pKa = 6.21PSNGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLGLRR301 pKa = 11.84LGLGLGLRR309 pKa = 11.84LPLRR313 pKa = 11.84LGFGLGLRR321 pKa = 11.84VRR323 pKa = 11.84VRR325 pKa = 11.84LRR327 pKa = 11.84VRR329 pKa = 11.84LRR331 pKa = 11.84LTVRR335 pKa = 11.84VRR337 pKa = 11.84LL338 pKa = 3.85

Molecular weight: 30.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5906

0

5906

2211927

11

4553

374.5

41.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.967 ± 0.048

2.539 ± 0.029

4.794 ± 0.029

6.729 ± 0.058

3.651 ± 0.031

6.802 ± 0.037

2.779 ± 0.037

4.237 ± 0.045

5.054 ± 0.038

9.196 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.48 ± 0.038

3.711 ± 0.031

4.966 ± 0.038

3.705 ± 0.049

6.582 ± 0.039

7.904 ± 0.048

5.612 ± 0.037

7.284 ± 0.045

1.405 ± 0.015

2.593 ± 0.049
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski