Sinapis alba cryptic virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U3AHS1|A0A0U3AHS1_9VIRU Capsid protein OS=Sinapis alba cryptic virus 1 OX=1768874 PE=4 SV=1
MM1 pKa = 6.52TTGDD5 pKa = 3.87RR6 pKa = 11.84VTPTDD11 pKa = 4.7GITTVDD17 pKa = 3.63APTATLEE24 pKa = 4.21AKK26 pKa = 10.33LDD28 pKa = 3.96SSSTAYY34 pKa = 10.46LKK36 pKa = 10.85SATDD40 pKa = 4.05FLTQSSRR47 pKa = 11.84IGTLRR52 pKa = 11.84TSYY55 pKa = 10.77KK56 pKa = 9.84DD57 pKa = 3.04RR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 10.25VYY63 pKa = 10.56LKK65 pKa = 9.52SQAMFDD71 pKa = 4.05SLVEE75 pKa = 4.22LYY77 pKa = 10.89SLLFTTQWQVFRR89 pKa = 11.84RR90 pKa = 11.84FTDD93 pKa = 3.12IFVPPANVTATRR105 pKa = 11.84YY106 pKa = 9.92LAMNYY111 pKa = 9.6ISMWIQDD118 pKa = 3.9TYY120 pKa = 11.75AMNRR124 pKa = 11.84AALMKK129 pKa = 10.52LSVVALNDD137 pKa = 3.63RR138 pKa = 11.84FPVEE142 pKa = 4.08IPIVGYY148 pKa = 10.64QYY150 pKa = 11.25DD151 pKa = 3.96AYY153 pKa = 10.65LAHH156 pKa = 7.22LSAALRR162 pKa = 11.84PTLTKK167 pKa = 10.98HH168 pKa = 5.5MMEE171 pKa = 4.18DD172 pKa = 3.99TLWIPCFTRR181 pKa = 11.84SPNFQVEE188 pKa = 4.74SPFGITGYY196 pKa = 10.38VINDD200 pKa = 3.63VIFTGAMNIMKK211 pKa = 9.62EE212 pKa = 3.89RR213 pKa = 11.84KK214 pKa = 7.94LWRR217 pKa = 11.84IIDD220 pKa = 3.92LPTNVLGRR228 pKa = 11.84PSWLFDD234 pKa = 2.91WHH236 pKa = 7.56DD237 pKa = 4.23DD238 pKa = 4.37DD239 pKa = 6.33RR240 pKa = 11.84VCAWFPMEE248 pKa = 5.61GNFTMDD254 pKa = 4.56DD255 pKa = 3.06VTMAYY260 pKa = 9.43ILGVACTPKK269 pKa = 10.49LAPCDD274 pKa = 3.72VDD276 pKa = 3.14DD277 pKa = 4.05WQYY280 pKa = 11.13FPNDD284 pKa = 3.63VVPANLDD291 pKa = 3.17PYY293 pKa = 11.64AFLRR297 pKa = 11.84LTNRR301 pKa = 11.84RR302 pKa = 11.84FHH304 pKa = 6.56GGYY307 pKa = 10.32EE308 pKa = 3.86IRR310 pKa = 11.84TLDD313 pKa = 3.74AANMPGQTGTTTDD326 pKa = 2.66SRR328 pKa = 11.84KK329 pKa = 9.66RR330 pKa = 11.84PRR332 pKa = 11.84PGEE335 pKa = 4.22STSAPALPQTSEE347 pKa = 4.43PQTQMQVDD355 pKa = 4.76TPPAPKK361 pKa = 9.79PRR363 pKa = 11.84FRR365 pKa = 11.84LVDD368 pKa = 3.15WTYY371 pKa = 11.16HH372 pKa = 5.06YY373 pKa = 11.24LVVLNKK379 pKa = 9.85EE380 pKa = 3.78DD381 pKa = 3.49HH382 pKa = 6.28TRR384 pKa = 11.84FAALKK389 pKa = 9.08SICWNN394 pKa = 3.46

Molecular weight: 45.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U3AHS1|A0A0U3AHS1_9VIRU Capsid protein OS=Sinapis alba cryptic virus 1 OX=1768874 PE=4 SV=1
MM1 pKa = 7.6RR2 pKa = 11.84PSITGYY8 pKa = 10.77DD9 pKa = 3.66YY10 pKa = 11.72TNFTQDD16 pKa = 3.65LLKK19 pKa = 10.39SDD21 pKa = 4.06RR22 pKa = 11.84KK23 pKa = 9.53HH24 pKa = 5.14PHH26 pKa = 3.57VVRR29 pKa = 11.84RR30 pKa = 11.84EE31 pKa = 3.7TATTYY36 pKa = 11.01RR37 pKa = 11.84DD38 pKa = 3.3DD39 pKa = 3.86FAFKK43 pKa = 10.48EE44 pKa = 4.54VISLDD49 pKa = 3.07RR50 pKa = 11.84LAYY53 pKa = 8.99IQRR56 pKa = 11.84LEE58 pKa = 3.95GWSRR62 pKa = 11.84SYY64 pKa = 11.09YY65 pKa = 10.56LPEE68 pKa = 3.89KK69 pKa = 10.34HH70 pKa = 6.85LEE72 pKa = 4.03ALLQYY77 pKa = 7.38ATPNVPCTALNLNVYY92 pKa = 9.02RR93 pKa = 11.84QAIQVVEE100 pKa = 4.0NGLRR104 pKa = 11.84SLQPVRR110 pKa = 11.84AFDD113 pKa = 4.02VLTEE117 pKa = 4.46LNQISYY123 pKa = 9.09KK124 pKa = 9.82QSSAAGYY131 pKa = 10.32DD132 pKa = 3.61YY133 pKa = 10.87IGAKK137 pKa = 10.36GPIDD141 pKa = 3.9GEE143 pKa = 4.05NHH145 pKa = 5.27KK146 pKa = 10.57RR147 pKa = 11.84AISRR151 pKa = 11.84AKK153 pKa = 9.39AVLWSVVKK161 pKa = 10.64EE162 pKa = 4.03DD163 pKa = 5.04GEE165 pKa = 4.89GIDD168 pKa = 3.87HH169 pKa = 7.55AIEE172 pKa = 4.02TSVPDD177 pKa = 3.16VGYY180 pKa = 8.78TRR182 pKa = 11.84TQLADD187 pKa = 3.48LTEE190 pKa = 4.21KK191 pKa = 10.41TKK193 pKa = 10.33VRR195 pKa = 11.84QVWGRR200 pKa = 11.84AFHH203 pKa = 6.55YY204 pKa = 10.25ILLEE208 pKa = 4.02GLVAQPFIQSIMEE221 pKa = 4.36GPSFIHH227 pKa = 6.66TGRR230 pKa = 11.84DD231 pKa = 3.27PTLSVPQSLAKK242 pKa = 10.57VSSQCKK248 pKa = 9.75YY249 pKa = 10.34IYY251 pKa = 10.89SLDD254 pKa = 3.53WKK256 pKa = 11.19SFDD259 pKa = 3.12ATVNRR264 pKa = 11.84FEE266 pKa = 5.28INTSFDD272 pKa = 3.5IIKK275 pKa = 10.57SKK277 pKa = 11.16VIFPNYY283 pKa = 7.0EE284 pKa = 3.55TEE286 pKa = 3.98QAFEE290 pKa = 3.82ITRR293 pKa = 11.84QLFLHH298 pKa = 6.4KK299 pKa = 10.14KK300 pKa = 8.12VAAPDD305 pKa = 4.08GYY307 pKa = 10.13IYY309 pKa = 9.6EE310 pKa = 4.17AHH312 pKa = 6.84KK313 pKa = 10.56GIPSGSYY320 pKa = 6.51YY321 pKa = 10.55TSMVGSIVNRR331 pKa = 11.84LRR333 pKa = 11.84IEE335 pKa = 4.36YY336 pKa = 9.01IWRR339 pKa = 11.84IATGHH344 pKa = 6.11GPIHH348 pKa = 7.12CEE350 pKa = 3.71TLGDD354 pKa = 4.95DD355 pKa = 4.45SLCGDD360 pKa = 5.25DD361 pKa = 4.23IFVPATQLADD371 pKa = 2.98IANRR375 pKa = 11.84IGWYY379 pKa = 10.2FNADD383 pKa = 2.91KK384 pKa = 10.71TEE386 pKa = 3.87YY387 pKa = 9.31STIPEE392 pKa = 4.2GVTFLGRR399 pKa = 11.84TSTGNLNSRR408 pKa = 11.84DD409 pKa = 3.43LTKK412 pKa = 10.61CLRR415 pKa = 11.84LLVYY419 pKa = 9.82PEE421 pKa = 4.27YY422 pKa = 9.97PVTSGRR428 pKa = 11.84ISAYY432 pKa = 9.12RR433 pKa = 11.84ARR435 pKa = 11.84SIADD439 pKa = 3.41DD440 pKa = 3.77SGGLSDD446 pKa = 6.05LLNQVAIRR454 pKa = 11.84LEE456 pKa = 3.93RR457 pKa = 11.84SYY459 pKa = 11.53GIASEE464 pKa = 4.48EE465 pKa = 4.05EE466 pKa = 3.45IPAYY470 pKa = 9.91FKK472 pKa = 10.74RR473 pKa = 11.84YY474 pKa = 8.94VPFMM478 pKa = 4.76

Molecular weight: 54.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

872

394

478

436.0

49.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.569 ± 0.186

1.147 ± 0.076

6.651 ± 0.598

4.472 ± 1.044

4.243 ± 0.36

5.161 ± 0.841

1.95 ± 0.265

6.078 ± 1.096

4.014 ± 0.444

8.486 ± 0.089

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.179 ± 1.012

3.555 ± 0.157

5.734 ± 0.853

3.555 ± 0.159

6.766 ± 0.054

6.651 ± 0.821

8.257 ± 1.335

6.307 ± 0.024

1.835 ± 0.437

5.39 ± 0.51
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski