Caulobacter vibrioides (Caulobacter crescentus)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4642 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V2F7K9|A0A0V2F7K9_CAUVI Pectate lyase OS=Caulobacter vibrioides OX=155892 GN=AS593_23375 PE=4 SV=1
MM1 pKa = 7.36SLSSALSTAVSGLTAQSIALSAISEE26 pKa = 4.39NIANSSTTAYY36 pKa = 7.44KK37 pKa = 7.9TTEE40 pKa = 3.72VSFQSLVSGAMGSNTSTSSVVAKK63 pKa = 9.72TNQALNVTGTIASTSVATNIAIDD86 pKa = 3.65GAGYY90 pKa = 9.52FVVAGAPGDD99 pKa = 3.75TGSDD103 pKa = 2.88LVYY106 pKa = 10.77SRR108 pKa = 11.84NGSFSTDD115 pKa = 2.62SDD117 pKa = 4.22GYY119 pKa = 10.56LVNSEE124 pKa = 4.58GYY126 pKa = 10.17YY127 pKa = 11.18LMGFPTDD134 pKa = 3.32ADD136 pKa = 4.11GNILSSNTSDD146 pKa = 3.48LTSLSAINLDD156 pKa = 4.5SISGTAKK163 pKa = 9.49ATSTVTMAANLPADD177 pKa = 3.76ATTGQTFTTSMEE189 pKa = 4.44VIDD192 pKa = 4.32SLGVSHH198 pKa = 7.03TVGQSWTKK206 pKa = 10.39TGDD209 pKa = 3.67NTWSLTLSDD218 pKa = 4.49PVLTKK223 pKa = 10.86DD224 pKa = 3.34GATTSGTISPSTVTVTFNSDD244 pKa = 2.52GSLATTDD251 pKa = 4.14PSPVAIGITGLSTGAADD268 pKa = 4.53SAITLDD274 pKa = 4.25LGDD277 pKa = 4.62AGGTDD282 pKa = 3.84GLTQFASTSSTLSISPTFEE301 pKa = 3.5QDD303 pKa = 2.87GANYY307 pKa = 9.34GQLSGITIDD316 pKa = 3.99GNGLVTANFDD326 pKa = 3.68NGVSLAIYY334 pKa = 7.7QIPVATFSNPNGLTHH349 pKa = 7.2VSGTVYY355 pKa = 10.89DD356 pKa = 4.21EE357 pKa = 4.08NTNAGQVHH365 pKa = 6.94LNLPGDD371 pKa = 4.24GSAGSLVASALEE383 pKa = 4.34GSTTDD388 pKa = 4.07IATEE392 pKa = 3.96FNKK395 pKa = 10.21MIIAQQAYY403 pKa = 8.5SAASQVVSASSDD415 pKa = 3.31MFDD418 pKa = 3.52TLIQAVRR425 pKa = 3.38

Molecular weight: 42.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V2FF12|A0A0V2FF12_CAUVI 6 7-dimethyl-8-ribityllumazine synthase OS=Caulobacter vibrioides OX=155892 GN=ribH PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.58LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 5.26GYY18 pKa = 7.96RR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 9.84NGQKK29 pKa = 9.53IVARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 9.04RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4642

0

4642

1543440

29

4428

332.5

35.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.189 ± 0.063

0.672 ± 0.009

5.884 ± 0.025

5.308 ± 0.028

3.538 ± 0.02

9.224 ± 0.062

1.683 ± 0.015

4.126 ± 0.023

3.306 ± 0.029

10.021 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.043 ± 0.016

2.371 ± 0.027

5.483 ± 0.035

3.109 ± 0.019

7.07 ± 0.038

5.201 ± 0.033

5.354 ± 0.037

7.738 ± 0.026

1.45 ± 0.017

2.231 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski