Arundinibacter roseus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Arundinibacter

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4679 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R4K275|A0A4R4K275_9BACT Lrp/AsnC family transcriptional regulator OS=Arundinibacter roseus OX=2070510 GN=EZE20_19325 PE=4 SV=1
TT1 pKa = 5.8YY2 pKa = 9.72TPDD5 pKa = 3.56PGFVGEE11 pKa = 6.19DD12 pKa = 3.66VFCYY16 pKa = 10.08AASDD20 pKa = 4.98GIASDD25 pKa = 3.96TACVAVTVQPNPTPANDD42 pKa = 3.85SPLALNDD49 pKa = 3.37NTQTTEE55 pKa = 3.98GTPLSVNVLANDD67 pKa = 3.42VDD69 pKa = 4.18PDD71 pKa = 3.69GDD73 pKa = 3.77ALQNPTVVQAPANGTASVNADD94 pKa = 3.01GTILYY99 pKa = 8.88TPDD102 pKa = 3.54PGFVGTDD109 pKa = 2.9TLTYY113 pKa = 9.67RR114 pKa = 11.84VCDD117 pKa = 3.17TGTPSLCDD125 pKa = 3.24SAQVIVQVLPAPVDD139 pKa = 3.44PAANQAPIAVDD150 pKa = 3.54DD151 pKa = 4.95ANTTTVNTPVTGTVAANDD169 pKa = 3.84SDD171 pKa = 4.5PDD173 pKa = 3.7GDD175 pKa = 4.13ALTFAGLTNPANGTLTVNADD195 pKa = 2.93GSYY198 pKa = 10.79VYY200 pKa = 10.35TPAADD205 pKa = 4.85FIGSDD210 pKa = 3.14VFTYY214 pKa = 7.31TVCDD218 pKa = 3.23NGTPSLCDD226 pKa = 3.0TATVFITVTPVAGKK240 pKa = 10.03VALLPKK246 pKa = 10.28VYY248 pKa = 10.51LQGALFGVFLPDD260 pKa = 2.78TLMRR264 pKa = 11.84DD265 pKa = 3.78DD266 pKa = 5.76LRR268 pKa = 11.84LKK270 pKa = 10.81NLIPTTSPYY279 pKa = 10.69PDD281 pKa = 3.49MGLIGITSANVANITVVNASTTSTNNSIVDD311 pKa = 3.44WVFVEE316 pKa = 4.76LRR318 pKa = 11.84SALDD322 pKa = 3.24STLVLDD328 pKa = 3.99SRR330 pKa = 11.84SALVQRR336 pKa = 11.84DD337 pKa = 3.31GDD339 pKa = 3.84IVEE342 pKa = 4.22VDD344 pKa = 3.63GLSAITFDD352 pKa = 3.68SAVPGSYY359 pKa = 9.94YY360 pKa = 10.53VVVRR364 pKa = 11.84HH365 pKa = 6.09RR366 pKa = 11.84NHH368 pKa = 6.71LGVMSASPIALSTATTVVDD387 pKa = 4.06FRR389 pKa = 11.84KK390 pKa = 10.07AATPTFNLNAASAVNIPQVPVQQGVALWAGNALYY424 pKa = 10.92LNTLDD429 pKa = 4.59SMRR432 pKa = 11.84EE433 pKa = 4.07VIFQGPDD440 pKa = 2.65NDD442 pKa = 3.73VNVIYY447 pKa = 10.24QQVINSPANALFKK460 pKa = 11.29SPFFNLKK467 pKa = 9.89GYY469 pKa = 10.86YY470 pKa = 10.22NGDD473 pKa = 2.73INMNGEE479 pKa = 4.45TIFQGTGNDD488 pKa = 3.45VEE490 pKa = 5.56FIYY493 pKa = 11.05QNVQKK498 pKa = 10.44NHH500 pKa = 6.27EE501 pKa = 4.6GNTLKK506 pKa = 10.74QPFFKK511 pKa = 10.29IKK513 pKa = 10.15EE514 pKa = 4.03QTPP517 pKa = 3.36

Molecular weight: 54.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R4KG47|A0A4R4KG47_9BACT Efflux RND transporter periplasmic adaptor subunit OS=Arundinibacter roseus OX=2070510 GN=EZE20_08595 PE=3 SV=1
MM1 pKa = 7.61SNLKK5 pKa = 10.65NYY7 pKa = 8.47FQLGDD12 pKa = 3.52VFSYY16 pKa = 8.96FIRR19 pKa = 11.84VFKK22 pKa = 10.73KK23 pKa = 10.28PSSDD27 pKa = 3.39APNSFSLRR35 pKa = 11.84MMHH38 pKa = 7.15GINRR42 pKa = 11.84ISIVMFLFCVVVMIIRR58 pKa = 11.84AIMRR62 pKa = 3.93

Molecular weight: 7.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4679

0

4679

1707330

13

3951

364.9

40.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.645 ± 0.038

0.81 ± 0.013

5.164 ± 0.028

6.09 ± 0.04

4.898 ± 0.027

7.054 ± 0.041

1.88 ± 0.02

6.255 ± 0.029

5.675 ± 0.036

10.031 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.274 ± 0.016

4.768 ± 0.035

4.38 ± 0.026

4.155 ± 0.024

4.813 ± 0.033

6.427 ± 0.033

6.031 ± 0.042

6.501 ± 0.028

1.346 ± 0.014

3.802 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski