Chryseobacterium piperi

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group;

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3502 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A086BAY3|A0A086BAY3_9FLAO Hydroxyacid dehydrogenase OS=Chryseobacterium piperi OX=558152 GN=IQ37_11675 PE=3 SV=1
MM1 pKa = 7.78KK2 pKa = 9.23NTLLLKK8 pKa = 9.68TIILTLVLSSYY19 pKa = 11.88SMVKK23 pKa = 10.11AQYY26 pKa = 10.66DD27 pKa = 3.84PNQDD31 pKa = 3.28LDD33 pKa = 3.72GDD35 pKa = 4.6GIINSIDD42 pKa = 4.16LDD44 pKa = 4.37DD45 pKa = 6.14DD46 pKa = 4.09NDD48 pKa = 5.11GIPDD52 pKa = 4.01LLEE55 pKa = 4.5SPPSNTVVNGTFTGTSAPWVLGTGWVFNSGGGNVRR90 pKa = 11.84IEE92 pKa = 4.1TDD94 pKa = 3.17NVSNRR99 pKa = 11.84DD100 pKa = 3.17LRR102 pKa = 11.84QTVNNLNRR110 pKa = 11.84TNGTIALTMRR120 pKa = 11.84LGAQDD125 pKa = 3.72GSNAAGSTASLQVILNGTVYY145 pKa = 10.0ATINNGTTRR154 pKa = 11.84STATNNITITLANGATSNFTPYY176 pKa = 7.72TTAVATGYY184 pKa = 8.34TFQTFTINIPYY195 pKa = 9.63NSPGTADD202 pKa = 4.73LIFRR206 pKa = 11.84ATTVLDD212 pKa = 3.91DD213 pKa = 3.48WTLDD217 pKa = 4.26DD218 pKa = 3.69IAIPAFIEE226 pKa = 4.31DD227 pKa = 4.05TDD229 pKa = 4.32GDD231 pKa = 4.69GIPNYY236 pKa = 10.14QDD238 pKa = 4.45LDD240 pKa = 3.95SDD242 pKa = 4.51NDD244 pKa = 3.81GCLDD248 pKa = 4.14AMEE251 pKa = 5.0GDD253 pKa = 4.02EE254 pKa = 4.06NVAYY258 pKa = 10.97SMLVAAAPGLTVGTGSTAPNQNLCSTGACVDD289 pKa = 3.57AQGVPVVVNAGGAADD304 pKa = 3.7IGSDD308 pKa = 3.23QGQGIGDD315 pKa = 3.9SKK317 pKa = 11.49NNAVIACYY325 pKa = 9.89CYY327 pKa = 10.66KK328 pKa = 10.49PVVTAGTALNTPYY341 pKa = 10.94GITALGRR348 pKa = 11.84AGANSGNWPMVRR360 pKa = 11.84KK361 pKa = 9.28GAWTALEE368 pKa = 4.33AKK370 pKa = 9.6TKK372 pKa = 10.55GFVPNRR378 pKa = 11.84LTSTQISAIPAANLVEE394 pKa = 4.66GMMVYY399 pKa = 8.62NTTLDD404 pKa = 3.75CLQVNTNGTASGWACFNTQTCPTNN428 pKa = 3.32

Molecular weight: 44.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A086BLU0|A0A086BLU0_9FLAO Leucine--tRNA ligase OS=Chryseobacterium piperi OX=558152 GN=leuS PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.59RR11 pKa = 11.84KK12 pKa = 9.33RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 10.03HH17 pKa = 3.97GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.01GRR40 pKa = 11.84KK41 pKa = 9.03SLTISAARR49 pKa = 11.84AKK51 pKa = 10.4RR52 pKa = 3.38

Molecular weight: 6.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3502

0

3502

1174652

51

2623

335.4

37.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.152 ± 0.039

0.695 ± 0.012

5.358 ± 0.029

6.498 ± 0.054

5.315 ± 0.034

6.489 ± 0.039

1.724 ± 0.018

7.981 ± 0.04

8.086 ± 0.046

9.056 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.356 ± 0.019

6.315 ± 0.047

3.508 ± 0.022

3.619 ± 0.025

3.365 ± 0.027

6.601 ± 0.032

5.563 ± 0.036

6.002 ± 0.029

1.082 ± 0.015

4.236 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski