Oryza meyeriana var. granulata

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza;

Average proteome isoelectric point is 6.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 44256 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G1CRB6|A0A6G1CRB6_9ORYZ Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018278 PE=3 SV=1
MM1 pKa = 8.22DD2 pKa = 6.58DD3 pKa = 5.39DD4 pKa = 5.56LVHH7 pKa = 6.82DD8 pKa = 4.98VNWALAPDD16 pKa = 3.85SCDD19 pKa = 3.95DD20 pKa = 4.2QDD22 pKa = 4.0GQADD26 pKa = 3.49AVAEE30 pKa = 4.3SEE32 pKa = 4.16RR33 pKa = 11.84QEE35 pKa = 4.45ADD37 pKa = 3.17VVMGDD42 pKa = 3.07SDD44 pKa = 4.11VVHH47 pKa = 6.34FVVDD51 pKa = 3.84SMAGDD56 pKa = 3.47IEE58 pKa = 4.9VPDD61 pKa = 3.89LQVAVDD67 pKa = 3.58IKK69 pKa = 11.07VDD71 pKa = 3.85NVSYY75 pKa = 9.67WCDD78 pKa = 2.81RR79 pKa = 11.84CGRR82 pKa = 11.84VHH84 pKa = 7.51GDD86 pKa = 3.18GWWRR90 pKa = 11.84SCKK93 pKa = 10.31GPCSRR98 pKa = 11.84CGLVRR103 pKa = 11.84RR104 pKa = 11.84DD105 pKa = 3.96YY106 pKa = 11.25MPMSWIYY113 pKa = 11.05GLDD116 pKa = 3.4EE117 pKa = 5.13FDD119 pKa = 4.33YY120 pKa = 11.13EE121 pKa = 5.39SNNNYY126 pKa = 8.75QAQFQNN132 pKa = 3.63

Molecular weight: 14.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G1D920|A0A6G1D920_9ORYZ Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032957 PE=4 SV=1
MM1 pKa = 7.98AMGQRR6 pKa = 11.84QRR8 pKa = 11.84GRR10 pKa = 11.84GGGVGVGIGAVRR22 pKa = 11.84ARR24 pKa = 11.84ARR26 pKa = 11.84WRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84VPGVGVGNGAPLARR44 pKa = 11.84MAAAATTLGRR54 pKa = 11.84RR55 pKa = 11.84GPARR59 pKa = 11.84TRR61 pKa = 11.84LRR63 pKa = 11.84QSRR66 pKa = 11.84GRR68 pKa = 11.84AVV70 pKa = 2.82

Molecular weight: 7.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

39309

4947

44256

13918302

49

5155

314.5

34.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.439 ± 0.019

1.897 ± 0.007

5.387 ± 0.011

6.077 ± 0.016

3.558 ± 0.008

7.5 ± 0.013

2.473 ± 0.006

4.263 ± 0.009

4.862 ± 0.011

9.355 ± 0.015

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.473 ± 0.005

3.394 ± 0.009

5.61 ± 0.014

3.445 ± 0.009

6.467 ± 0.011

8.259 ± 0.014

4.832 ± 0.008

6.846 ± 0.009

1.336 ± 0.005

2.522 ± 0.006
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski