Rotifer birnavirus strain Palavas

Taxonomy: Viruses; Riboviria; Orthornavirae; Birnaviridae; unclassified Birnaviridae

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|D3GMG3|D3GMG3_9VIRU Protein VP1 OS=Rotifer birnavirus strain Palavas OX=595652 GN=RdRp PE=4 SV=1
MM1 pKa = 6.48QTITKK6 pKa = 8.54TRR8 pKa = 11.84TSKK11 pKa = 10.56YY12 pKa = 9.91LKK14 pKa = 10.46SILNPASGPCHH25 pKa = 6.45IPDD28 pKa = 5.84DD29 pKa = 3.78IVTRR33 pKa = 11.84CSLRR37 pKa = 11.84SEE39 pKa = 4.0TTTYY43 pKa = 11.06NITAPGSGQGIFIFYY58 pKa = 9.71PNSPFGWCGYY68 pKa = 10.35HH69 pKa = 5.1YY70 pKa = 9.79TFDD73 pKa = 3.77GTKK76 pKa = 10.24YY77 pKa = 10.51LYY79 pKa = 10.91DD80 pKa = 4.84NITGPLDD87 pKa = 3.3TAQNLDD93 pKa = 3.09QNYY96 pKa = 9.09NYY98 pKa = 10.42SRR100 pKa = 11.84LVSQLLTLRR109 pKa = 11.84SSTLPAGVYY118 pKa = 10.3ALNGTFNAITYY129 pKa = 8.08DD130 pKa = 3.73GCVSEE135 pKa = 5.81ANLPTTQYY143 pKa = 11.38GQLLSLNSDD152 pKa = 3.95VIDD155 pKa = 3.41KK156 pKa = 10.72VGNVLVGDD164 pKa = 4.41GVAILSLPNRR174 pKa = 11.84FDD176 pKa = 4.11VPFCRR181 pKa = 11.84MNDD184 pKa = 3.76PAPSTGNTGALFRR197 pKa = 11.84SSIVDD202 pKa = 3.16ATANLRR208 pKa = 11.84YY209 pKa = 8.83EE210 pKa = 4.15MQMAPIAIGAMPAYY224 pKa = 8.92NTILASINVDD234 pKa = 3.07NVRR237 pKa = 11.84SISVRR242 pKa = 11.84GNIPLINSSRR252 pKa = 11.84LNVTSVITYY261 pKa = 9.62NVLYY265 pKa = 10.49QDD267 pKa = 3.65FTGATIYY274 pKa = 10.75QEE276 pKa = 4.15TKK278 pKa = 10.08AAPITIDD285 pKa = 3.4PNYY288 pKa = 9.99ATGPNNQGGCSFMVEE303 pKa = 4.47STFSAMPAGAKK314 pKa = 7.84HH315 pKa = 5.18TQPVAAVAFSIANIVQPTVSSWDD338 pKa = 3.37VNEE341 pKa = 4.65FGFAPFSNVSTEE353 pKa = 4.2STSSITLTVEE363 pKa = 3.83AVSAAFPGMNSPVTVVAYY381 pKa = 10.26QGLAGGSVLTLSGVSNYY398 pKa = 9.44EE399 pKa = 4.31LIPNPSLKK407 pKa = 10.58KK408 pKa = 10.38NLPTSYY414 pKa = 10.38GRR416 pKa = 11.84HH417 pKa = 6.28DD418 pKa = 4.01PAEE421 pKa = 4.09LNYY424 pKa = 10.64VKK426 pKa = 10.1MVLANRR432 pKa = 11.84EE433 pKa = 4.04EE434 pKa = 4.61LGVKK438 pKa = 8.51TVFALPEE445 pKa = 4.04YY446 pKa = 10.0KK447 pKa = 10.07QLLTRR452 pKa = 11.84LEE454 pKa = 4.02EE455 pKa = 4.51FYY457 pKa = 11.54NLDD460 pKa = 3.41TNTYY464 pKa = 10.89AEE466 pKa = 4.21AFDD469 pKa = 3.46WGKK472 pKa = 10.43LLRR475 pKa = 11.84TIKK478 pKa = 10.59DD479 pKa = 2.99IAVPTLSTIFPQFGPLIGAGSALGDD504 pKa = 3.65EE505 pKa = 4.59LLKK508 pKa = 11.18SFAASGTAIAASGTPITRR526 pKa = 11.84ASAVTPGVDD535 pKa = 4.46LVDD538 pKa = 3.88LRR540 pKa = 11.84NYY542 pKa = 11.39AMDD545 pKa = 3.11NWDD548 pKa = 4.08IVNMDD553 pKa = 4.65LQNLTYY559 pKa = 10.18NSQMLYY565 pKa = 9.55TKK567 pKa = 10.23KK568 pKa = 10.61LYY570 pKa = 10.46VGEE573 pKa = 4.29RR574 pKa = 11.84LSSEE578 pKa = 3.99GPPRR582 pKa = 11.84GVLFPTITMRR592 pKa = 11.84NNALMSHH599 pKa = 7.04MIYY602 pKa = 10.42LAVPGNWSSRR612 pKa = 11.84LPMNVRR618 pKa = 11.84DD619 pKa = 4.4NYY621 pKa = 11.42SEE623 pKa = 4.0TANGKK628 pKa = 9.74RR629 pKa = 11.84IWGIANTYY637 pKa = 9.51LGHH640 pKa = 7.33IMTNQDD646 pKa = 2.53ITLLPILSIQGGFAIIPDD664 pKa = 3.88EE665 pKa = 4.23APILEE670 pKa = 4.45GTSCVSAILCAYY682 pKa = 10.13RR683 pKa = 11.84GDD685 pKa = 3.97FQGIPPALVTGNAKK699 pKa = 10.3LIEE702 pKa = 4.16GRR704 pKa = 11.84YY705 pKa = 9.15VVMPNPAQQMKK716 pKa = 10.18KK717 pKa = 10.15QIAAQKK723 pKa = 8.09EE724 pKa = 4.34LKK726 pKa = 10.66FIGADD731 pKa = 3.32LSGPLLTIFHH741 pKa = 7.0VINEE745 pKa = 4.16LSGLEE750 pKa = 4.28TKK752 pKa = 10.74NKK754 pKa = 9.15TFDD757 pKa = 3.81TVKK760 pKa = 10.32HH761 pKa = 6.11DD762 pKa = 3.74QDD764 pKa = 3.28HH765 pKa = 6.07SRR767 pKa = 11.84SVNLCADD774 pKa = 4.84DD775 pKa = 5.29DD776 pKa = 5.07TMQQWQDD783 pKa = 2.92LSAQISTQDD792 pKa = 3.14DD793 pKa = 4.1GFRR796 pKa = 11.84KK797 pKa = 10.24LIHH800 pKa = 6.29ILNWTNRR807 pKa = 11.84NGLADD812 pKa = 3.58MLYY815 pKa = 10.77NFAEE819 pKa = 4.22TDD821 pKa = 3.31PDD823 pKa = 3.83GNRR826 pKa = 11.84LYY828 pKa = 9.94KK829 pKa = 10.43TIAPLTAEE837 pKa = 4.13YY838 pKa = 10.39KK839 pKa = 10.6ARR841 pKa = 11.84NPEE844 pKa = 3.96SKK846 pKa = 9.38TPYY849 pKa = 8.24EE850 pKa = 4.06AQRR853 pKa = 11.84AKK855 pKa = 10.92AEE857 pKa = 4.37RR858 pKa = 11.84ISANLRR864 pKa = 11.84KK865 pKa = 9.78QYY867 pKa = 11.29GEE869 pKa = 4.03AFTPEE874 pKa = 3.85WVEE877 pKa = 3.46QHH879 pKa = 6.68GYY881 pKa = 10.25RR882 pKa = 11.84GPTSEE887 pKa = 5.3EE888 pKa = 3.32IRR890 pKa = 11.84ALTSQVARR898 pKa = 11.84PEE900 pKa = 4.2KK901 pKa = 10.44IEE903 pKa = 4.62AIIAATIKK911 pKa = 11.1NNGGDD916 pKa = 3.96KK917 pKa = 10.76LSPDD921 pKa = 3.31QRR923 pKa = 11.84SEE925 pKa = 3.89IEE927 pKa = 3.78VAIRR931 pKa = 11.84NKK933 pKa = 10.62GKK935 pKa = 10.43GLNPDD940 pKa = 3.2EE941 pKa = 4.96LMRR944 pKa = 11.84ALGRR948 pKa = 11.84EE949 pKa = 4.3GTNLGSKK956 pKa = 10.45AEE958 pKa = 3.93NFIINSGIKK967 pKa = 10.21DD968 pKa = 3.65EE969 pKa = 4.31EE970 pKa = 3.99LKK972 pKa = 10.72QRR974 pKa = 11.84IRR976 pKa = 11.84EE977 pKa = 4.07EE978 pKa = 3.75IMTSGKK984 pKa = 10.31GLSADD989 pKa = 3.91RR990 pKa = 11.84LRR992 pKa = 11.84EE993 pKa = 3.81LMGVNRR999 pKa = 11.84VEE1001 pKa = 4.11PRR1003 pKa = 11.84KK1004 pKa = 8.28PTPAVRR1010 pKa = 11.84KK1011 pKa = 9.56LVGALQAAPKK1021 pKa = 9.24ATAQKK1026 pKa = 10.13QIQAPTPRR1034 pKa = 11.84ARR1036 pKa = 11.84QPQRR1040 pKa = 11.84PQAEE1044 pKa = 4.09QTPLQKK1050 pKa = 11.19LLMRR1054 pKa = 11.84TMEE1057 pKa = 4.24EE1058 pKa = 4.13EE1059 pKa = 4.13SS1060 pKa = 3.31

Molecular weight:
115.99 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|D3GMG3|D3GMG3_9VIRU Protein VP1 OS=Rotifer birnavirus strain Palavas OX=595652 GN=RdRp PE=4 SV=1
MM1 pKa = 7.85SDD3 pKa = 3.9LFNSNKK9 pKa = 9.56VNKK12 pKa = 8.98TKK14 pKa = 9.96ATEE17 pKa = 3.98LFKK20 pKa = 11.4VRR22 pKa = 11.84GEE24 pKa = 4.29TEE26 pKa = 4.32KK27 pKa = 11.09EE28 pKa = 3.76FLPQQFVAPKK38 pKa = 10.11SDD40 pKa = 4.13FSPLVVEE47 pKa = 5.39NIVARR52 pKa = 11.84NRR54 pKa = 11.84LKK56 pKa = 10.57AYY58 pKa = 8.77QPRR61 pKa = 11.84AIPQLEE67 pKa = 4.24PVNIDD72 pKa = 4.06TIPLINPSLLNFEE85 pKa = 4.3GTPFKK90 pKa = 11.28NDD92 pKa = 2.19ITYY95 pKa = 9.97PLGSKK100 pKa = 10.27SEE102 pKa = 4.21FLPKK106 pKa = 9.27YY107 pKa = 7.59TPQYY111 pKa = 9.96FHH113 pKa = 7.14LPYY116 pKa = 10.24DD117 pKa = 3.4EE118 pKa = 5.73HH119 pKa = 8.52LIKK122 pKa = 10.63QIIYY126 pKa = 9.45RR127 pKa = 11.84YY128 pKa = 8.11TNATIEE134 pKa = 4.06NSQEE138 pKa = 3.54EE139 pKa = 4.41MSFIRR144 pKa = 11.84SVVEE148 pKa = 3.67AAEE151 pKa = 3.99KK152 pKa = 9.35QAYY155 pKa = 9.61GNGSIEE161 pKa = 4.19GQLTRR166 pKa = 11.84LSQMNQIRR174 pKa = 11.84WGTGEE179 pKa = 3.96KK180 pKa = 9.81PRR182 pKa = 11.84PAKK185 pKa = 10.17SCYY188 pKa = 10.15DD189 pKa = 3.31ILKK192 pKa = 10.34SSLGSSTTIEE202 pKa = 3.59NLARR206 pKa = 11.84IFSCYY211 pKa = 10.26LPVGRR216 pKa = 11.84VDD218 pKa = 4.95SIIDD222 pKa = 3.3QTFPGLFLKK231 pKa = 10.57PSYY234 pKa = 10.89YY235 pKa = 10.5LDD237 pKa = 4.44PEE239 pKa = 4.65DD240 pKa = 5.95DD241 pKa = 5.98KK242 pKa = 11.32LTQWFPSINMSSISGLPYY260 pKa = 9.45MGKK263 pKa = 9.77SKK265 pKa = 10.98KK266 pKa = 9.43DD267 pKa = 3.3TFAEE271 pKa = 4.0ALVIADD277 pKa = 4.1SFVGGIMSVVKK288 pKa = 10.32QYY290 pKa = 10.88GIPGMSDD297 pKa = 2.97AAQKK301 pKa = 10.8KK302 pKa = 9.31AVNDD306 pKa = 3.82LKK308 pKa = 11.26EE309 pKa = 4.54LMDD312 pKa = 4.22EE313 pKa = 4.14YY314 pKa = 10.58WYY316 pKa = 10.5LGCGILFPKK325 pKa = 10.19AEE327 pKa = 4.27RR328 pKa = 11.84YY329 pKa = 9.15DD330 pKa = 3.59RR331 pKa = 11.84SKK333 pKa = 10.85WSTKK337 pKa = 6.75TRR339 pKa = 11.84NIFAMPFASHH349 pKa = 7.4IIGSLISSPIMKK361 pKa = 10.29NSLNATNYY369 pKa = 7.48NTPSLYY375 pKa = 10.76AFSPFHH381 pKa = 6.64GGLDD385 pKa = 3.73VILSKK390 pKa = 10.82VRR392 pKa = 11.84NAIGQHH398 pKa = 4.15ITFVYY403 pKa = 10.13ADD405 pKa = 3.64NWYY408 pKa = 8.77VAYY411 pKa = 9.64WEE413 pKa = 4.21EE414 pKa = 4.9DD415 pKa = 3.16RR416 pKa = 11.84RR417 pKa = 11.84THH419 pKa = 4.14TWYY422 pKa = 11.01SIDD425 pKa = 3.64LVKK428 pKa = 10.88AEE430 pKa = 4.34SQTVPLDD437 pKa = 3.56GTTLAYY443 pKa = 10.67YY444 pKa = 10.98LLTRR448 pKa = 11.84GHH450 pKa = 5.65TVKK453 pKa = 10.85DD454 pKa = 3.86PNTGEE459 pKa = 5.22LIPAYY464 pKa = 9.34NVSWAYY470 pKa = 9.48IALFVVPSLSIDD482 pKa = 3.65AACLISNQQIQFPGQGSGNTWTFLLNHH509 pKa = 6.27QKK511 pKa = 10.69SAMLDD516 pKa = 3.71YY517 pKa = 9.5SWRR520 pKa = 11.84RR521 pKa = 11.84AGCPRR526 pKa = 11.84PDD528 pKa = 3.25MTKK531 pKa = 10.67NSPFEE536 pKa = 4.35LKK538 pKa = 10.72VLTRR542 pKa = 11.84TNIQVVIEE550 pKa = 4.59LEE552 pKa = 4.37VKK554 pKa = 10.5DD555 pKa = 5.0LEE557 pKa = 4.58VVMDD561 pKa = 4.0NAISTSSTEE570 pKa = 4.12GYY572 pKa = 9.77FGKK575 pKa = 10.4EE576 pKa = 3.86PSNNAPNTQPIIPLDD591 pKa = 3.77LLGWDD596 pKa = 3.2ATYY599 pKa = 11.06AKK601 pKa = 9.98SLNRR605 pKa = 11.84FIPVLASNRR614 pKa = 11.84LASSVAMAKK623 pKa = 10.09KK624 pKa = 10.3DD625 pKa = 3.39VSRR628 pKa = 11.84DD629 pKa = 3.76FKK631 pKa = 10.94QKK633 pKa = 10.07PYY635 pKa = 10.63HH636 pKa = 5.22LQIYY640 pKa = 8.99QLARR644 pKa = 11.84FEE646 pKa = 4.22ALRR649 pKa = 11.84MVGAWLYY656 pKa = 10.31PSVDD660 pKa = 2.94TALRR664 pKa = 11.84EE665 pKa = 4.0RR666 pKa = 11.84CDD668 pKa = 3.9EE669 pKa = 4.0IRR671 pKa = 11.84KK672 pKa = 7.53TLYY675 pKa = 10.62KK676 pKa = 10.56KK677 pKa = 10.59FGSILAEE684 pKa = 4.61DD685 pKa = 4.27DD686 pKa = 2.9WTEE689 pKa = 3.67AFKK692 pKa = 10.21NTEE695 pKa = 4.02FGSMQEE701 pKa = 4.99LIDD704 pKa = 3.74IDD706 pKa = 3.33ISVPVTFKK714 pKa = 11.2ALNEE718 pKa = 4.06LNEE721 pKa = 4.26GDD723 pKa = 4.65PYY725 pKa = 11.7SSITPQEE732 pKa = 4.01RR733 pKa = 11.84KK734 pKa = 10.42SMEE737 pKa = 3.9EE738 pKa = 3.76RR739 pKa = 11.84EE740 pKa = 4.14KK741 pKa = 10.68WDD743 pKa = 3.5LDD745 pKa = 3.66EE746 pKa = 5.82LVKK749 pKa = 10.61LDD751 pKa = 5.54YY752 pKa = 10.56IDD754 pKa = 5.05SPNKK758 pKa = 7.89NTGVEE763 pKa = 4.29VFSEE767 pKa = 4.24KK768 pKa = 9.91TPKK771 pKa = 10.28PMLSKK776 pKa = 10.9SEE778 pKa = 3.98MFATSMLINKK788 pKa = 8.61LRR790 pKa = 11.84TKK792 pKa = 10.37RR793 pKa = 11.84NEE795 pKa = 4.08VIKK798 pKa = 10.7AGYY801 pKa = 9.96DD802 pKa = 3.23PAIPKK807 pKa = 10.32DD808 pKa = 3.8KK809 pKa = 10.9LPSDD813 pKa = 3.85VKK815 pKa = 10.98KK816 pKa = 10.39LAKK819 pKa = 10.14EE820 pKa = 3.8FDD822 pKa = 4.29VIATMAHH829 pKa = 6.58DD830 pKa = 5.06EE831 pKa = 4.18IVSIKK836 pKa = 10.41SWMFRR841 pKa = 11.84SKK843 pKa = 10.55EE844 pKa = 3.72YY845 pKa = 10.73SLPSNKK851 pKa = 9.12PGNMKK856 pKa = 10.52SGGSNPLVSSRR867 pKa = 11.84VPFEE871 pKa = 4.02RR872 pKa = 11.84KK873 pKa = 9.05EE874 pKa = 4.02GKK876 pKa = 8.62TDD878 pKa = 3.88LKK880 pKa = 10.84RR881 pKa = 11.84GALFDD886 pKa = 3.92KK887 pKa = 11.02VGMGPRR893 pKa = 11.84KK894 pKa = 9.31IEE896 pKa = 4.0QYY898 pKa = 11.0KK899 pKa = 10.53SGAPLEE905 pKa = 4.15VLNVSRR911 pKa = 11.84SAKK914 pKa = 9.69KK915 pKa = 9.58RR916 pKa = 11.84AKK918 pKa = 10.25ARR920 pKa = 11.84AKK922 pKa = 10.44KK923 pKa = 10.31EE924 pKa = 3.95EE925 pKa = 4.38SNLPAGEE932 pKa = 4.35MEE934 pKa = 4.22TPTRR938 pKa = 11.84KK939 pKa = 7.14TAPMIQPAPVGIQDD953 pKa = 3.55VQLPQPVEE961 pKa = 4.14SQTTRR966 pKa = 11.84TKK968 pKa = 10.67QQDD971 pKa = 3.44QQVQQEE977 pKa = 4.42DD978 pKa = 4.27GTVRR982 pKa = 11.84KK983 pKa = 9.68LLGSLKK989 pKa = 10.64GVDD992 pKa = 3.58YY993 pKa = 10.97YY994 pKa = 11.65GRR996 pKa = 11.84PNYY999 pKa = 9.82IPSKK1003 pKa = 7.57TVKK1006 pKa = 10.03NALNSKK1012 pKa = 9.68YY1013 pKa = 9.8FVKK1016 pKa = 10.56LVEE1019 pKa = 4.51LSPNPLEE1026 pKa = 4.73TIAIPDD1032 pKa = 3.88NIEE1035 pKa = 3.49ALEE1038 pKa = 4.06RR1039 pKa = 11.84FRR1041 pKa = 11.84SSSRR1045 pKa = 3.21

Molecular weight:
117.98 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

2105

1045

1060

1052.5

116.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.648 ± 0.91

0.713 ± 0.102

4.941 ± 0.237

5.701 ± 0.523

3.515 ± 0.37

6.081 ± 0.742

0.998 ± 0.03

6.413 ± 0.142

6.176 ± 1.37

8.836 ± 0.164

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.47 ± 0.013

5.843 ± 0.567

6.413 ± 0.139

4.133 ± 0.154

4.798 ± 0.08

7.886 ± 0.605

6.746 ± 0.809

5.606 ± 0.1

1.14 ± 0.217

3.943 ± 0.126

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski