Hankyongella ginsenosidimutans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Hankyongella

Average proteome isoelectric point is 7.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1977 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D7C9E4|A0A4D7C9E4_9SPHN Uncharacterized protein OS=Hankyongella ginsenosidimutans OX=1763828 GN=E6W36_08015 PE=4 SV=1
MM1 pKa = 7.81ANGLSSAVSTLTFTLQDD18 pKa = 2.9TDD20 pKa = 3.36EE21 pKa = 4.59RR22 pKa = 11.84LNPVIASTPVPVAEE36 pKa = 4.38NTTGTTIAALSGGSDD51 pKa = 3.71PDD53 pKa = 4.0GDD55 pKa = 4.04PQEE58 pKa = 3.84IDD60 pKa = 3.43YY61 pKa = 10.81FFVTGYY67 pKa = 11.1DD68 pKa = 3.12PGGLLRR74 pKa = 11.84IDD76 pKa = 3.62QTATGANLVVATAFDD91 pKa = 4.19YY92 pKa = 11.26EE93 pKa = 4.76SASQLYY99 pKa = 9.3PGQFYY104 pKa = 9.12YY105 pKa = 10.85TDD107 pKa = 3.09AGGRR111 pKa = 11.84YY112 pKa = 8.89VEE114 pKa = 4.28AKK116 pKa = 10.11VLAVQATNSNGFGSDD131 pKa = 3.32ADD133 pKa = 3.47NSTVNRR139 pKa = 11.84SPATTIKK146 pKa = 10.81VYY148 pKa = 8.99VTNADD153 pKa = 4.01DD154 pKa = 5.05APGAPSAQNINVSEE168 pKa = 4.12NVTGVIATLSGGIDD182 pKa = 3.38QDD184 pKa = 3.35GDD186 pKa = 3.82AISYY190 pKa = 8.44VFSNGSTTYY199 pKa = 10.91GDD201 pKa = 3.62YY202 pKa = 10.77TISEE206 pKa = 4.69DD207 pKa = 3.68YY208 pKa = 10.52KK209 pKa = 11.33LSITRR214 pKa = 11.84AFDD217 pKa = 3.87YY218 pKa = 10.98EE219 pKa = 4.41SLPANNKK226 pKa = 6.4STSVAVYY233 pKa = 10.09SKK235 pKa = 11.68ANGKK239 pKa = 9.53ISANSANITLNITNANDD256 pKa = 3.25APYY259 pKa = 10.86VYY261 pKa = 9.03MGPSTISIKK270 pKa = 10.76EE271 pKa = 4.0NIPINTVIAEE281 pKa = 3.95FTINDD286 pKa = 3.61QDD288 pKa = 3.67NDD290 pKa = 4.1NITTTLGTSVLNNLLGLKK308 pKa = 9.34PKK310 pKa = 10.19AAIRR314 pKa = 11.84IFINCTT320 pKa = 3.01

Molecular weight: 33.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D7C5M3|A0A4D7C5M3_9SPHN Uncharacterized protein OS=Hankyongella ginsenosidimutans OX=1763828 GN=E6W36_03330 PE=4 SV=1
MM1 pKa = 7.44AVSSVQVAITILLVTTWFILAVWALFRR28 pKa = 11.84SRR30 pKa = 11.84RR31 pKa = 11.84SSQRR35 pKa = 11.84ARR37 pKa = 11.84AARR40 pKa = 11.84AWALRR45 pKa = 11.84LRR47 pKa = 11.84ALISTTPGAISWRR60 pKa = 11.84RR61 pKa = 11.84GMSPSVQVAARR72 pKa = 11.84LAFAA76 pKa = 5.28

Molecular weight: 8.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1977

0

1977

414989

24

1110

209.9

22.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.719 ± 0.088

1.125 ± 0.025

5.759 ± 0.054

4.605 ± 0.056

3.21 ± 0.037

8.384 ± 0.06

1.903 ± 0.032

4.497 ± 0.037

2.558 ± 0.049

10.29 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.205 ± 0.03

2.52 ± 0.041

5.545 ± 0.065

3.568 ± 0.038

8.514 ± 0.09

5.785 ± 0.056

5.504 ± 0.056

6.9 ± 0.053

1.397 ± 0.028

2.011 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski