Aquimarina aggregata

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5047 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A163BYT3|A0A163BYT3_9FLAO Uncharacterized protein OS=Aquimarina aggregata OX=1642818 GN=AWE51_00215 PE=4 SV=1
MM1 pKa = 7.52FLQLLIILNFKK12 pKa = 10.25LMKK15 pKa = 9.2QLFYY19 pKa = 10.94IFILLLGFTSCEE31 pKa = 3.8DD32 pKa = 3.75VIDD35 pKa = 3.74VDD37 pKa = 4.27VPNGEE42 pKa = 3.92PRR44 pKa = 11.84LVVDD48 pKa = 5.14ASFEE52 pKa = 4.35VYY54 pKa = 10.61LNEE57 pKa = 4.6VPVTVKK63 pKa = 10.91NSIQLSLSAPFFGNTIPKK81 pKa = 10.08VNDD84 pKa = 3.07ATVFITDD91 pKa = 4.63LSDD94 pKa = 3.31GTIINYY100 pKa = 8.74TEE102 pKa = 4.03TNGTGFYY109 pKa = 10.18IPSSTFLPEE118 pKa = 3.85FNVDD122 pKa = 3.45YY123 pKa = 10.43EE124 pKa = 4.08LTIIYY129 pKa = 10.52NSEE132 pKa = 4.01TYY134 pKa = 10.52KK135 pKa = 10.53ATTQMFASVPIDD147 pKa = 3.89NIEE150 pKa = 4.12QGDD153 pKa = 3.96GTLFEE158 pKa = 4.95GDD160 pKa = 3.26EE161 pKa = 4.41TEE163 pKa = 4.73IIVSFTDD170 pKa = 3.46DD171 pKa = 3.2GARR174 pKa = 11.84DD175 pKa = 3.78DD176 pKa = 5.55FYY178 pKa = 11.62LFNFDD183 pKa = 4.26FDD185 pKa = 4.28LLEE188 pKa = 4.15VSEE191 pKa = 4.29DD192 pKa = 2.95RR193 pKa = 11.84FYY195 pKa = 11.17QGEE198 pKa = 4.5SFNFSYY204 pKa = 10.16FYY206 pKa = 11.24EE207 pKa = 4.73DD208 pKa = 2.89VTAGQNITIKK218 pKa = 10.54ILGIDD223 pKa = 3.21KK224 pKa = 10.83RR225 pKa = 11.84FFNYY229 pKa = 10.35AGLLIDD235 pKa = 5.12QSDD238 pKa = 4.12PDD240 pKa = 3.9GGGPFATPPALLRR253 pKa = 11.84GNVINTTNSDD263 pKa = 3.63NYY265 pKa = 11.1ALGYY269 pKa = 10.65FNLSEE274 pKa = 4.48ANQLDD279 pKa = 3.91FTIQEE284 pKa = 4.32KK285 pKa = 10.71

Molecular weight: 32.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A162XJN4|A0A162XJN4_9FLAO HTH luxR-type domain-containing protein OS=Aquimarina aggregata OX=1642818 GN=AWE51_13885 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.15RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84KK13 pKa = 8.29NKK15 pKa = 9.34HH16 pKa = 4.03GFRR19 pKa = 11.84EE20 pKa = 4.05RR21 pKa = 11.84MASVNGRR28 pKa = 11.84KK29 pKa = 9.21VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.92GRR39 pKa = 11.84KK40 pKa = 8.34KK41 pKa = 10.22ISVSSEE47 pKa = 3.56LRR49 pKa = 11.84HH50 pKa = 5.43KK51 pKa = 10.29HH52 pKa = 5.04

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5047

0

5047

1774003

49

4566

351.5

39.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.826 ± 0.036

0.736 ± 0.011

5.738 ± 0.03

6.38 ± 0.032

5.187 ± 0.028

6.385 ± 0.035

1.772 ± 0.016

8.365 ± 0.038

7.988 ± 0.051

8.989 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.95 ± 0.018

6.497 ± 0.039

3.352 ± 0.023

3.412 ± 0.019

3.417 ± 0.018

6.705 ± 0.031

6.168 ± 0.043

5.89 ± 0.026

1.112 ± 0.013

4.131 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski