Sugarcane striate virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A218KH22|A0A218KH22_9GEMI Capsid protein OS=Sugarcane striate virus OX=1868659 PE=3 SV=1
MM1 pKa = 7.36RR2 pKa = 11.84TNANAVRR9 pKa = 11.84RR10 pKa = 11.84VEE12 pKa = 4.94FMTTPATTEE21 pKa = 4.01DD22 pKa = 3.79AFQSGTQEE30 pKa = 4.31SSDD33 pKa = 3.85SPSEE37 pKa = 4.44PIHH40 pKa = 5.16THH42 pKa = 3.12QTTWKK47 pKa = 9.41RR48 pKa = 11.84NFEE51 pKa = 4.06FRR53 pKa = 11.84SCNAFLTYY61 pKa = 9.53PRR63 pKa = 11.84CALDD67 pKa = 3.57CEE69 pKa = 4.63YY70 pKa = 11.46VLDD73 pKa = 4.73LPVGSYY79 pKa = 7.89VFRR82 pKa = 11.84WSPIYY87 pKa = 10.88ALVSAEE93 pKa = 3.76NHH95 pKa = 5.26QDD97 pKa = 3.26GGIHH101 pKa = 6.03LHH103 pKa = 6.7CLIQTLGRR111 pKa = 11.84ITTRR115 pKa = 11.84DD116 pKa = 3.27PAFFDD121 pKa = 5.1LDD123 pKa = 3.73NQYY126 pKa = 10.86HH127 pKa = 6.7PNIQAARR134 pKa = 11.84SPDD137 pKa = 3.22NTRR140 pKa = 11.84DD141 pKa = 3.81YY142 pKa = 11.06ILKK145 pKa = 10.47DD146 pKa = 3.85PISHH150 pKa = 5.64VEE152 pKa = 3.81RR153 pKa = 11.84GTFQPRR159 pKa = 11.84RR160 pKa = 11.84GNTRR164 pKa = 11.84NPGDD168 pKa = 3.75RR169 pKa = 11.84GSGSKK174 pKa = 10.26DD175 pKa = 3.09AIMKK179 pKa = 9.31EE180 pKa = 3.93IFRR183 pKa = 11.84TATSKK188 pKa = 10.91EE189 pKa = 3.99DD190 pKa = 3.83YY191 pKa = 10.93LRR193 pKa = 11.84MIQKK197 pKa = 9.61SFPFEE202 pKa = 3.95WAKK205 pKa = 10.73HH206 pKa = 4.91LSQFEE211 pKa = 3.98YY212 pKa = 10.21SANYY216 pKa = 9.33LFPPVPEE223 pKa = 4.46PFNNDD228 pKa = 3.09FPEE231 pKa = 4.38TEE233 pKa = 4.15PDD235 pKa = 4.28LICRR239 pKa = 11.84EE240 pKa = 4.27VLDD243 pKa = 4.04EE244 pKa = 4.16WQHH247 pKa = 6.67DD248 pKa = 3.83NLFQVTPYY256 pKa = 10.63TYY258 pKa = 10.09MLANHH263 pKa = 7.04HH264 pKa = 6.13CTSIEE269 pKa = 3.95EE270 pKa = 4.3ATSDD274 pKa = 3.97LQWMADD280 pKa = 3.28HH281 pKa = 7.05ARR283 pKa = 11.84TLRR286 pKa = 11.84SSTIGNRR293 pKa = 11.84ASTSLDD299 pKa = 3.21LQGQEE304 pKa = 4.01RR305 pKa = 11.84QPGPEE310 pKa = 3.6AA311 pKa = 4.32

Molecular weight: 35.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A218KH31|A0A218KH31_9GEMI Replication-associated protein OS=Sugarcane striate virus OX=1868659 PE=3 SV=1
MM1 pKa = 7.61SSRR4 pKa = 11.84GPSRR8 pKa = 11.84KK9 pKa = 9.25RR10 pKa = 11.84PRR12 pKa = 11.84SSTRR16 pKa = 11.84VVKK19 pKa = 10.11WPSEE23 pKa = 3.88ALRR26 pKa = 11.84KK27 pKa = 10.25GYY29 pKa = 8.32TPYY32 pKa = 11.08NSYY35 pKa = 11.18LRR37 pKa = 11.84GTKK40 pKa = 9.64SGRR43 pKa = 11.84SDD45 pKa = 3.22KK46 pKa = 10.99RR47 pKa = 11.84PNLQVQTFYY56 pKa = 11.63ACGPTQVQVKK66 pKa = 10.19KK67 pKa = 10.9GGIVNLLNGYY77 pKa = 7.14TRR79 pKa = 11.84GSDD82 pKa = 3.09DD83 pKa = 3.9NQRR86 pKa = 11.84HH87 pKa = 4.27TCEE90 pKa = 3.98TITYY94 pKa = 9.46KK95 pKa = 10.93LSLDD99 pKa = 3.36LHH101 pKa = 7.78INIATDD107 pKa = 3.86LFKK110 pKa = 11.35NCARR114 pKa = 11.84GTGVIWLIYY123 pKa = 8.55DD124 pKa = 3.99TSPTGTQLTTQQIFAYY140 pKa = 9.16PDD142 pKa = 3.47ALSLYY147 pKa = 8.8PYY149 pKa = 7.71TWKK152 pKa = 10.51VARR155 pKa = 11.84DD156 pKa = 3.32QCHH159 pKa = 5.62RR160 pKa = 11.84FIIKK164 pKa = 10.15RR165 pKa = 11.84RR166 pKa = 11.84WTFRR170 pKa = 11.84LEE172 pKa = 4.29SNGTLGSSDD181 pKa = 3.89YY182 pKa = 10.54SSKK185 pKa = 10.84PIAPCNNNVYY195 pKa = 10.07FSKK198 pKa = 10.23FVKK201 pKa = 10.3RR202 pKa = 11.84LGVRR206 pKa = 11.84TEE208 pKa = 3.85WKK210 pKa = 8.43NTTGGDD216 pKa = 3.48AGDD219 pKa = 3.88MKK221 pKa = 11.13SGGLFLAFAAGNGMLFNVDD240 pKa = 3.02GTTRR244 pKa = 11.84LYY246 pKa = 10.78FKK248 pKa = 10.41STGNQQ253 pKa = 2.93

Molecular weight: 28.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1048

96

388

262.0

29.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.534 ± 0.424

2.29 ± 0.237

6.107 ± 0.943

4.676 ± 1.116

5.63 ± 0.532

6.202 ± 1.573

2.576 ± 0.604

4.962 ± 0.415

4.103 ± 0.901

6.775 ± 0.738

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.527 ± 0.17

5.153 ± 0.669

6.679 ± 0.904

4.771 ± 0.31

7.156 ± 0.284

7.156 ± 0.411

8.206 ± 0.75

4.389 ± 0.717

1.908 ± 0.103

4.198 ± 0.455
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski