Caballeronia telluris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6225 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A158FFD7|A0A158FFD7_9BURK RNA polymerase sigma-54 factor OS=Caballeronia telluris OX=326475 GN=AWB66_00857 PE=3 SV=1
MM1 pKa = 7.9SEE3 pKa = 3.9VLEE6 pKa = 4.24YY7 pKa = 10.77KK8 pKa = 10.32SWVCLICGWIYY19 pKa = 11.0NEE21 pKa = 4.18EE22 pKa = 4.63DD23 pKa = 3.46GLPDD27 pKa = 3.42EE28 pKa = 5.97GIAPGTRR35 pKa = 11.84FADD38 pKa = 3.83IPASWRR44 pKa = 11.84CPLCDD49 pKa = 3.49VGKK52 pKa = 10.44EE53 pKa = 3.77DD54 pKa = 3.78FAAVEE59 pKa = 4.31FF60 pKa = 4.49

Molecular weight: 6.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A158J9J7|A0A158J9J7_9BURK Pyridoxamine 5'-phosphate oxidase OS=Caballeronia telluris OX=326475 GN=AWB66_03939 PE=4 SV=1
MM1 pKa = 7.45TNRR4 pKa = 11.84FASSLTRR11 pKa = 11.84VTRR14 pKa = 11.84VATRR18 pKa = 11.84AARR21 pKa = 11.84PARR24 pKa = 11.84RR25 pKa = 11.84GVVRR29 pKa = 11.84ALRR32 pKa = 11.84HH33 pKa = 4.48HH34 pKa = 6.24TARR37 pKa = 11.84TQAVAEE43 pKa = 3.91QLKK46 pKa = 9.53FVRR49 pKa = 11.84PVDD52 pKa = 4.93GIRR55 pKa = 11.84SWFRR59 pKa = 11.84GFFLTLRR66 pKa = 11.84VRR68 pKa = 11.84AASRR72 pKa = 11.84RR73 pKa = 11.84VSLKK77 pKa = 10.61ALLRR81 pKa = 11.84RR82 pKa = 11.84PAQLRR87 pKa = 11.84APVRR91 pKa = 11.84KK92 pKa = 9.72AKK94 pKa = 10.37AAAQTSRR101 pKa = 11.84RR102 pKa = 11.84PRR104 pKa = 11.84RR105 pKa = 11.84LAPSSAGWFAFAARR119 pKa = 4.17

Molecular weight: 13.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6225

0

6225

1965106

29

4819

315.7

34.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.763 ± 0.046

0.934 ± 0.011

5.573 ± 0.026

5.252 ± 0.032

3.758 ± 0.022

8.073 ± 0.031

2.282 ± 0.015

4.765 ± 0.021

3.304 ± 0.028

10.065 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.014

2.786 ± 0.018

5.041 ± 0.022

3.418 ± 0.019

7.052 ± 0.032

5.702 ± 0.026

5.387 ± 0.025

7.717 ± 0.024

1.359 ± 0.013

2.372 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski