Pseudidiomarina atlantica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Pseudidiomarina

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2290 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A094J8Z5|A0A094J8Z5_9GAMM LysR family transcriptional regulator OS=Pseudidiomarina atlantica OX=1517416 GN=IDAT_05205 PE=3 SV=1
MM1 pKa = 7.21VSNNKK6 pKa = 9.71FIYY9 pKa = 10.19GLTFALILLSGSAQAATYY27 pKa = 10.23DD28 pKa = 3.63FRR30 pKa = 11.84KK31 pKa = 10.01NLPPGCSQKK40 pKa = 10.96GNSPAQCPNGLTLQWNDD57 pKa = 2.91VLVFDD62 pKa = 6.1KK63 pKa = 10.74IAEE66 pKa = 4.27VNVTGNVWLSNAQVFLGANTPLTINATGSISSDD99 pKa = 2.41STMQMFGDD107 pKa = 4.6LNAVGQISLGSDD119 pKa = 3.02NQVQGNLNSQNQITLNNNTDD139 pKa = 3.33VTGSLVAPQVSLVSSNTITGPISATQLTLGFNSQVTGNLNVTNNLSVGSSSSITGSINAGNLQSNSPVSLNGPIVVDD216 pKa = 3.54NEE218 pKa = 3.93FNLASGSTVNGSVSANRR235 pKa = 11.84VTLAPSNSTLTGDD248 pKa = 3.28VTANEE253 pKa = 3.97NVIIGSGNTIDD264 pKa = 4.24GNVAAGFIRR273 pKa = 11.84LEE275 pKa = 4.25ASNATITGNAIATGNIVIDD294 pKa = 3.41WAGQIGGDD302 pKa = 3.34ATAVNITNNAGNTDD316 pKa = 3.91SVGGTAFCDD325 pKa = 3.7TSDD328 pKa = 3.44GAQPLSCQTGSGGGGATQCDD348 pKa = 4.14ALNDD352 pKa = 3.87LVDD355 pKa = 3.61YY356 pKa = 10.85GVIGDD361 pKa = 4.09SGFTYY366 pKa = 10.81GNNSEE371 pKa = 4.29INGTEE376 pKa = 3.44IDD378 pKa = 5.1DD379 pKa = 4.58PNNTNGNTPTPTGVVEE395 pKa = 4.11EE396 pKa = 5.0AVVQFPPLTPNVFPSFNGGNSFTNPANLGPGTYY429 pKa = 10.38NEE431 pKa = 4.84INLSGNNASASLTGGGTYY449 pKa = 10.3QIDD452 pKa = 4.19SINFGPQSQTLTLGPGDD469 pKa = 3.61YY470 pKa = 10.26FVRR473 pKa = 11.84TISLNNDD480 pKa = 2.95STIAIAPAGPVRR492 pKa = 11.84IFIEE496 pKa = 4.51DD497 pKa = 4.07SITGGNNLFFNPTGAVQNLMINLYY521 pKa = 10.36DD522 pKa = 3.82GASFEE527 pKa = 4.46IGNYY531 pKa = 8.27NQGSTTYY538 pKa = 9.24TFNGVLYY545 pKa = 10.64APYY548 pKa = 9.43TSNDD552 pKa = 2.55ITFGNNSNLQGAVLSAGTVDD572 pKa = 3.09IGNNTSINFTDD583 pKa = 3.78AVQDD587 pKa = 3.66AVRR590 pKa = 11.84DD591 pKa = 3.78AFGCDD596 pKa = 3.1TEE598 pKa = 4.56VTDD601 pKa = 3.15IHH603 pKa = 7.0HH604 pKa = 6.46YY605 pKa = 10.21RR606 pKa = 11.84IQHH609 pKa = 5.81PLSVVSCVAAPVQVVACLDD628 pKa = 3.47ASCASRR634 pKa = 11.84YY635 pKa = 8.26TDD637 pKa = 3.15ATEE640 pKa = 3.99VALSSSATGSTFANGGVLGFTGGQGTLGLRR670 pKa = 11.84YY671 pKa = 9.72VDD673 pKa = 4.48GGTTTVSLSNGAPAAQNPTEE693 pKa = 4.9CYY695 pKa = 10.35DD696 pKa = 3.65SAGTATTNCEE706 pKa = 3.66IEE708 pKa = 4.2FRR710 pKa = 11.84TAGLIFTANDD720 pKa = 3.76GLSAIPPSFAGTDD733 pKa = 3.8FDD735 pKa = 4.01VLARR739 pKa = 11.84AVEE742 pKa = 4.57TNTQTGACEE751 pKa = 3.77ARR753 pKa = 11.84LTGAQVLEE761 pKa = 4.54LATSCRR767 pKa = 11.84NPLTCQAGQNFIANGANVPLNDD789 pKa = 3.8AGATLSYY796 pKa = 11.31ANVPVTFDD804 pKa = 3.58ANGNAPLVANYY815 pKa = 9.68TDD817 pKa = 3.55VGALRR822 pKa = 11.84LHH824 pKa = 6.09GRR826 pKa = 11.84VNLSEE831 pKa = 4.68APNADD836 pKa = 3.35EE837 pKa = 6.05SVIDD841 pKa = 4.75DD842 pKa = 4.09PAITLTGTSVNDD854 pKa = 3.73FVVKK858 pKa = 9.9PHH860 pKa = 5.69TLRR863 pKa = 11.84LFAVDD868 pKa = 3.78NANQAVSATTSGGSAFATAGDD889 pKa = 4.08NFSLIITAEE898 pKa = 4.04NANGDD903 pKa = 3.48ATPNFGRR910 pKa = 11.84EE911 pKa = 3.82TPAAEE916 pKa = 4.06AQASYY921 pKa = 11.11VQTLYY926 pKa = 10.49PSTATAPASDD936 pKa = 3.88FVGTQGWQLDD946 pKa = 3.94TNRR949 pKa = 11.84AGSLRR954 pKa = 11.84TDD956 pKa = 3.23SARR959 pKa = 11.84WLDD962 pKa = 3.4VGTIEE967 pKa = 5.65LAPGLNGNSYY977 pKa = 10.81LGAGDD982 pKa = 3.63VAAKK986 pKa = 10.36QNATVGRR993 pKa = 11.84FAPFRR998 pKa = 11.84FALNTSAVANSCVAGDD1014 pKa = 3.95FTYY1017 pKa = 10.2MSEE1020 pKa = 4.04PALTVSYY1027 pKa = 10.42EE1028 pKa = 4.03LYY1030 pKa = 10.94AVDD1033 pKa = 3.38SDD1035 pKa = 4.58GNITEE1040 pKa = 5.03NYY1042 pKa = 9.57DD1043 pKa = 3.17SSGYY1047 pKa = 10.59SGTAEE1052 pKa = 3.94VGFAAANLAPADD1064 pKa = 3.76TATDD1068 pKa = 3.74RR1069 pKa = 11.84FADD1072 pKa = 3.84RR1073 pKa = 11.84LLNLAAQQAWTAGVMTFNAANAGFNRR1099 pKa = 11.84HH1100 pKa = 6.21PDD1102 pKa = 3.48GNIDD1106 pKa = 3.81GPFASLQLGLRR1117 pKa = 11.84VLSEE1121 pKa = 3.4IDD1123 pKa = 3.24NRR1125 pKa = 11.84NFAGSDD1131 pKa = 3.23LTLAAVAGAAAPLNGTAQLRR1151 pKa = 11.84YY1152 pKa = 9.96GRR1154 pKa = 11.84LVLEE1158 pKa = 4.12NTYY1161 pKa = 10.78GPEE1164 pKa = 3.99NEE1166 pKa = 4.67DD1167 pKa = 3.74LSVPLYY1173 pKa = 10.99AEE1175 pKa = 4.18YY1176 pKa = 10.6FDD1178 pKa = 3.91GSRR1181 pKa = 11.84FVTHH1185 pKa = 7.11TDD1187 pKa = 3.6DD1188 pKa = 3.83SCSSALVAGLNVIADD1203 pKa = 4.36PNNLTPVAAGSDD1215 pKa = 3.62STLTDD1220 pKa = 3.17GALPFDD1226 pKa = 4.15TLRR1229 pKa = 11.84WLAPGTGNTGEE1240 pKa = 4.72FIYY1243 pKa = 10.41EE1244 pKa = 3.69YY1245 pKa = 10.49DD1246 pKa = 3.41APAWLEE1252 pKa = 3.93FEE1254 pKa = 4.37WRR1256 pKa = 11.84DD1257 pKa = 3.43EE1258 pKa = 4.15AGAMYY1263 pKa = 10.56LDD1265 pKa = 4.02PRR1267 pKa = 11.84AIGGFGQYY1275 pKa = 9.73RR1276 pKa = 11.84GNSRR1280 pKa = 11.84VLFWKK1285 pKa = 10.07EE1286 pKa = 3.54VNN1288 pKa = 3.47

Molecular weight: 132.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A094IVG5|A0A094IVG5_9GAMM Uncharacterized protein OS=Pseudidiomarina atlantica OX=1517416 GN=IDAT_01505 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 10.05RR3 pKa = 11.84QKK5 pKa = 10.3RR6 pKa = 11.84DD7 pKa = 3.2RR8 pKa = 11.84LEE10 pKa = 3.91RR11 pKa = 11.84AHH13 pKa = 6.72AQGFKK18 pKa = 10.64AGVAGRR24 pKa = 11.84SKK26 pKa = 10.44EE27 pKa = 3.81LCPYY31 pKa = 9.54QNQEE35 pKa = 5.09IRR37 pKa = 11.84SQWLGGWRR45 pKa = 11.84DD46 pKa = 3.4AQEE49 pKa = 3.92ARR51 pKa = 11.84SVGLYY56 pKa = 9.82RR57 pKa = 5.42

Molecular weight: 6.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2290

0

2290

760291

35

1613

332.0

36.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.48 ± 0.059

0.867 ± 0.019

5.605 ± 0.038

6.252 ± 0.047

3.935 ± 0.03

7.084 ± 0.05

2.28 ± 0.026

5.432 ± 0.037

3.82 ± 0.045

10.648 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.436 ± 0.023

3.455 ± 0.038

4.25 ± 0.03

5.307 ± 0.056

5.641 ± 0.041

5.537 ± 0.035

5.219 ± 0.032

7.34 ± 0.042

1.419 ± 0.023

2.993 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski