Sanxia tombus-like virus 5

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 8.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KGI1|A0A1L3KGI1_9VIRU Uncharacterized protein OS=Sanxia tombus-like virus 5 OX=1923389 PE=4 SV=1
MM1 pKa = 7.62GSNPIARR8 pKa = 11.84KK9 pKa = 9.41VICHH13 pKa = 5.45QSCVNNEE20 pKa = 3.95IIGLSNRR27 pKa = 11.84HH28 pKa = 5.51IVDD31 pKa = 3.55RR32 pKa = 11.84SYY34 pKa = 11.34IKK36 pKa = 10.26FDD38 pKa = 3.19RR39 pKa = 11.84EE40 pKa = 3.8YY41 pKa = 10.32FLRR44 pKa = 11.84MAKK47 pKa = 8.81ATRR50 pKa = 11.84QEE52 pKa = 4.22LVDD55 pKa = 3.57AAQSEE60 pKa = 4.91KK61 pKa = 10.63VSKK64 pKa = 10.97LNVVYY69 pKa = 9.84GYY71 pKa = 10.86SGGKK75 pKa = 8.48RR76 pKa = 11.84AMYY79 pKa = 10.17LRR81 pKa = 11.84AADD84 pKa = 3.5VPFRR88 pKa = 11.84VAHH91 pKa = 5.56SSITAFVKK99 pKa = 10.33VEE101 pKa = 3.79KK102 pKa = 10.53GYY104 pKa = 11.24EE105 pKa = 3.84EE106 pKa = 6.07DD107 pKa = 3.3IHH109 pKa = 8.06AKK111 pKa = 8.67APRR114 pKa = 11.84MIQYY118 pKa = 9.84RR119 pKa = 11.84SPVYY123 pKa = 10.34NLNLATYY130 pKa = 8.46LKK132 pKa = 9.69PLEE135 pKa = 4.39HH136 pKa = 6.96ALYY139 pKa = 11.04ANLLNEE145 pKa = 4.26NGVPVIAKK153 pKa = 9.09GKK155 pKa = 9.07NPRR158 pKa = 11.84EE159 pKa = 3.86RR160 pKa = 11.84AEE162 pKa = 4.33HH163 pKa = 6.29IKK165 pKa = 10.82ACFDD169 pKa = 3.73DD170 pKa = 4.4KK171 pKa = 11.28PYY173 pKa = 10.96VLAMDD178 pKa = 4.22HH179 pKa = 6.9SKK181 pKa = 10.57FDD183 pKa = 3.21STIRR187 pKa = 11.84VEE189 pKa = 4.23HH190 pKa = 6.38LRR192 pKa = 11.84AEE194 pKa = 4.12HH195 pKa = 6.71KK196 pKa = 10.26IYY198 pKa = 11.14NRR200 pKa = 11.84VFKK203 pKa = 11.04SKK205 pKa = 10.27FLSKK209 pKa = 10.82LLDD212 pKa = 3.64LQIDD216 pKa = 3.56NRR218 pKa = 11.84GYY220 pKa = 8.82TRR222 pKa = 11.84NGLKK226 pKa = 10.3YY227 pKa = 9.27RR228 pKa = 11.84VRR230 pKa = 11.84GTRR233 pKa = 11.84MSGDD237 pKa = 3.5FNTGLGNSVINYY249 pKa = 8.93IVLKK253 pKa = 10.96SFLTMNNIKK262 pKa = 10.28GHH264 pKa = 6.58IYY266 pKa = 10.68LDD268 pKa = 4.16GDD270 pKa = 3.87DD271 pKa = 4.45SLVFIDD277 pKa = 4.71PKK279 pKa = 11.02HH280 pKa = 6.59RR281 pKa = 11.84DD282 pKa = 2.96LDD284 pKa = 4.01FSHH287 pKa = 7.36FEE289 pKa = 3.79KK290 pKa = 10.99CGFEE294 pKa = 4.31TKK296 pKa = 10.14RR297 pKa = 11.84EE298 pKa = 3.98EE299 pKa = 4.36SDD301 pKa = 3.58CLADD305 pKa = 5.03VDD307 pKa = 4.6FCQAKK312 pKa = 10.39YY313 pKa = 9.74MEE315 pKa = 4.75STNLMVRR322 pKa = 11.84NPVRR326 pKa = 11.84AISRR330 pKa = 11.84SLVQVRR336 pKa = 11.84RR337 pKa = 11.84SAFFRR342 pKa = 11.84IRR344 pKa = 11.84AGEE347 pKa = 4.36GIGMTRR353 pKa = 11.84THH355 pKa = 6.93PGVPVLYY362 pKa = 9.62PLYY365 pKa = 10.34KK366 pKa = 10.59QMGVDD371 pKa = 4.0EE372 pKa = 5.13KK373 pKa = 11.2PIFLKK378 pKa = 10.04WYY380 pKa = 8.7PLIDD384 pKa = 3.95DD385 pKa = 4.72RR386 pKa = 11.84EE387 pKa = 4.25VKK389 pKa = 9.18ITDD392 pKa = 3.4AARR395 pKa = 11.84VEE397 pKa = 5.14FWHH400 pKa = 6.59LWGISPDD407 pKa = 3.4EE408 pKa = 3.87QLALEE413 pKa = 4.27EE414 pKa = 4.43SRR416 pKa = 11.84SCGHH420 pKa = 7.02CGTLHH425 pKa = 6.14HH426 pKa = 7.2VEE428 pKa = 4.79FLCPSYY434 pKa = 11.37KK435 pKa = 10.18NAQSVSTTWSGLGG448 pKa = 3.36

Molecular weight: 51.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KGI1|A0A1L3KGI1_9VIRU Uncharacterized protein OS=Sanxia tombus-like virus 5 OX=1923389 PE=4 SV=1
MM1 pKa = 8.01CIRR4 pKa = 11.84ITMEE8 pKa = 4.61KK9 pKa = 9.99INPTKK14 pKa = 10.18SVRR17 pKa = 11.84RR18 pKa = 11.84AGANVTYY25 pKa = 10.34QRR27 pKa = 11.84NLQRR31 pKa = 11.84LTLSPPAKK39 pKa = 10.22LGVPLGQGPIPFSRR53 pKa = 11.84LGAVLNSGFLPPADD67 pKa = 3.89MLQSVSPKK75 pKa = 9.42RR76 pKa = 11.84DD77 pKa = 3.1KK78 pKa = 11.18PSFKK82 pKa = 10.17KK83 pKa = 9.76DD84 pKa = 3.14TSVQPQATHH93 pKa = 6.44TDD95 pKa = 2.84VTAQKK100 pKa = 10.89KK101 pKa = 5.87MRR103 pKa = 11.84KK104 pKa = 9.04VVITYY109 pKa = 8.93AAKK112 pKa = 9.68PAPPPPAPIVTVPAAKK128 pKa = 10.04PNLATEE134 pKa = 4.13HH135 pKa = 6.28MEE137 pKa = 3.9TRR139 pKa = 11.84LAGHH143 pKa = 6.41RR144 pKa = 11.84QHH146 pKa = 6.31VVKK149 pKa = 10.76GRR151 pKa = 11.84TRR153 pKa = 11.84DD154 pKa = 3.46AYY156 pKa = 11.01CNNIIDD162 pKa = 4.14KK163 pKa = 11.01ADD165 pKa = 3.22IEE167 pKa = 4.5KK168 pKa = 10.35PVLHH172 pKa = 6.32TEE174 pKa = 3.76EE175 pKa = 5.41LIYY178 pKa = 10.42DD179 pKa = 4.17VKK181 pKa = 10.96LLKK184 pKa = 10.35PSFKK188 pKa = 10.62AIVRR192 pKa = 11.84TGVARR197 pKa = 11.84LLRR200 pKa = 11.84AHH202 pKa = 6.13GRR204 pKa = 11.84EE205 pKa = 4.2AIAVEE210 pKa = 4.21AEE212 pKa = 4.3LLGHH216 pKa = 6.72LQLEE220 pKa = 4.43AMFQKK225 pKa = 10.56RR226 pKa = 11.84SAKK229 pKa = 10.35LLLLLKK235 pKa = 9.73TKK237 pKa = 10.57AIQWLKK243 pKa = 10.62NFSKK247 pKa = 10.6IILKK251 pKa = 6.58TTEE254 pKa = 3.3IVALVGRR261 pKa = 11.84TVAAAMCVHH270 pKa = 5.99EE271 pKa = 4.62VEE273 pKa = 4.51EE274 pKa = 4.52EE275 pKa = 3.75ARR277 pKa = 11.84QLLGDD282 pKa = 3.55QAEE285 pKa = 4.33TLNRR289 pKa = 11.84AKK291 pKa = 9.87HH292 pKa = 5.34TDD294 pKa = 3.78FLHH297 pKa = 6.39GKK299 pKa = 8.84CKK301 pKa = 10.5SGLFQSRR308 pKa = 11.84LAGDD312 pKa = 3.85DD313 pKa = 3.34

Molecular weight: 34.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

761

313

448

380.5

42.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.279 ± 1.615

1.708 ± 0.269

4.993 ± 0.725

5.519 ± 0.255

3.679 ± 0.702

5.65 ± 0.337

3.548 ± 0.221

5.519 ± 0.255

7.753 ± 0.746

9.593 ± 0.994

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.365 ± 0.081

4.074 ± 0.749

4.993 ± 1.073

3.154 ± 0.825

7.227 ± 0.324

5.782 ± 1.018

4.862 ± 1.155

7.359 ± 0.007

0.657 ± 0.211

3.285 ± 1.255
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski