Amino acid dipepetide frequency for Nigrospora oryzae fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.381AlaAla: 2.381 ± 0.12
0.0AlaCys: 0.0 ± 0.0
1.905AlaAsp: 1.905 ± 0.928
4.762AlaGlu: 4.762 ± 1.84
0.476AlaPhe: 0.476 ± 0.808
3.81AlaGly: 3.81 ± 0.224
1.905AlaHis: 1.905 ± 0.928
1.429AlaIle: 1.429 ± 0.696
4.762AlaLys: 4.762 ± 1.84
7.143AlaLeu: 7.143 ± 1.4
0.476AlaMet: 0.476 ± 0.232
2.857AlaAsn: 2.857 ± 1.392
1.429AlaPro: 1.429 ± 2.424
0.952AlaGln: 0.952 ± 0.464
2.381AlaArg: 2.381 ± 1.96
8.571AlaSer: 8.571 ± 1.024
2.381AlaThr: 2.381 ± 1.16
1.905AlaVal: 1.905 ± 0.928
2.381AlaTrp: 2.381 ± 0.12
2.381AlaTyr: 2.381 ± 1.16
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.952CysPhe: 0.952 ± 0.464
0.476CysGly: 0.476 ± 0.808
0.476CysHis: 0.476 ± 0.232
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.476CysLeu: 0.476 ± 0.232
0.476CysMet: 0.476 ± 0.232
0.476CysAsn: 0.476 ± 0.232
0.0CysPro: 0.0 ± 0.0
0.952CysGln: 0.952 ± 0.464
0.0CysArg: 0.0 ± 0.0
0.952CysSer: 0.952 ± 0.464
0.0CysThr: 0.0 ± 0.0
0.476CysVal: 0.476 ± 0.232
0.0CysTrp: 0.0 ± 0.0
0.476CysTyr: 0.476 ± 0.232
0.0CysXaa: 0.0 ± 0.0
Asp
2.857AspAla: 2.857 ± 1.728
0.476AspCys: 0.476 ± 0.232
3.81AspAsp: 3.81 ± 1.264
2.857AspGlu: 2.857 ± 0.688
1.905AspPhe: 1.905 ± 0.928
1.429AspGly: 1.429 ± 0.344
0.952AspHis: 0.952 ± 0.464
2.857AspIle: 2.857 ± 1.392
4.286AspLys: 4.286 ± 1.032
5.238AspLeu: 5.238 ± 0.568
2.381AspMet: 2.381 ± 1.16
0.476AspAsn: 0.476 ± 0.232
5.714AspPro: 5.714 ± 0.704
1.429AspGln: 1.429 ± 0.696
2.381AspArg: 2.381 ± 0.12
4.286AspSer: 4.286 ± 2.072
3.81AspThr: 3.81 ± 0.224
2.857AspVal: 2.857 ± 1.392
0.476AspTrp: 0.476 ± 0.232
3.333AspTyr: 3.333 ± 0.456
0.0AspXaa: 0.0 ± 0.0
Glu
5.238GluAla: 5.238 ± 1.608
0.952GluCys: 0.952 ± 0.464
3.333GluAsp: 3.333 ± 3.576
7.143GluGlu: 7.143 ± 1.72
3.81GluPhe: 3.81 ± 0.816
5.714GluGly: 5.714 ± 1.744
0.476GluHis: 0.476 ± 0.232
3.81GluIle: 3.81 ± 0.816
1.905GluLys: 1.905 ± 2.192
8.095GluLeu: 8.095 ± 2.296
2.381GluMet: 2.381 ± 0.172
1.429GluAsn: 1.429 ± 0.344
1.429GluPro: 1.429 ± 1.384
1.429GluGln: 1.429 ± 0.344
2.857GluArg: 2.857 ± 0.688
0.952GluSer: 0.952 ± 1.616
3.81GluThr: 3.81 ± 1.264
4.286GluVal: 4.286 ± 1.048
0.952GluTrp: 0.952 ± 0.464
1.905GluTyr: 1.905 ± 1.152
0.0GluXaa: 0.0 ± 0.0
Phe
0.476PheAla: 0.476 ± 0.232
0.952PheCys: 0.952 ± 0.464
4.286PheAsp: 4.286 ± 1.048
2.381PheGlu: 2.381 ± 1.16
3.333PhePhe: 3.333 ± 0.456
2.381PheGly: 2.381 ± 0.92
0.952PheHis: 0.952 ± 0.464
2.857PheIle: 2.857 ± 0.688
1.429PheLys: 1.429 ± 0.344
6.19PheLeu: 6.19 ± 3.016
1.905PheMet: 1.905 ± 0.112
3.81PheAsn: 3.81 ± 0.816
1.905PhePro: 1.905 ± 0.112
0.952PheGln: 0.952 ± 0.576
2.381PheArg: 2.381 ± 1.16
3.81PheSer: 3.81 ± 0.816
2.381PheThr: 2.381 ± 0.12
3.81PheVal: 3.81 ± 1.264
0.476PheTrp: 0.476 ± 0.808
2.857PheTyr: 2.857 ± 0.352
0.0PheXaa: 0.0 ± 0.0
Gly
3.81GlyAla: 3.81 ± 1.856
0.476GlyCys: 0.476 ± 0.232
1.905GlyAsp: 1.905 ± 0.112
3.333GlyGlu: 3.333 ± 3.576
2.857GlyPhe: 2.857 ± 0.688
2.381GlyGly: 2.381 ± 0.12
1.429GlyHis: 1.429 ± 0.696
2.381GlyIle: 2.381 ± 0.12
4.286GlyLys: 4.286 ± 1.032
8.095GlyLeu: 8.095 ± 0.216
1.429GlyMet: 1.429 ± 0.696
2.381GlyAsn: 2.381 ± 0.12
2.857GlyPro: 2.857 ± 0.352
0.952GlyGln: 0.952 ± 0.576
3.333GlyArg: 3.333 ± 1.624
1.905GlySer: 1.905 ± 0.112
2.857GlyThr: 2.857 ± 0.352
4.286GlyVal: 4.286 ± 1.048
1.905GlyTrp: 1.905 ± 0.112
2.857GlyTyr: 2.857 ± 0.352
0.0GlyXaa: 0.0 ± 0.0
His
0.476HisAla: 0.476 ± 0.232
0.0HisCys: 0.0 ± 0.0
1.905HisAsp: 1.905 ± 0.112
0.952HisGlu: 0.952 ± 0.576
0.476HisPhe: 0.476 ± 0.232
0.0HisGly: 0.0 ± 0.0
0.476HisHis: 0.476 ± 0.808
1.429HisIle: 1.429 ± 0.344
1.429HisLys: 1.429 ± 0.696
0.476HisLeu: 0.476 ± 0.232
1.429HisMet: 1.429 ± 0.696
1.429HisAsn: 1.429 ± 0.696
0.952HisPro: 0.952 ± 0.576
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
2.381HisSer: 2.381 ± 1.16
0.0HisThr: 0.0 ± 0.0
1.429HisVal: 1.429 ± 0.696
0.476HisTrp: 0.476 ± 0.232
0.476HisTyr: 0.476 ± 0.232
0.0HisXaa: 0.0 ± 0.0
Ile
1.429IleAla: 1.429 ± 0.696
0.476IleCys: 0.476 ± 0.232
4.286IleAsp: 4.286 ± 1.048
3.81IleGlu: 3.81 ± 0.224
2.381IlePhe: 2.381 ± 1.16
3.333IleGly: 3.333 ± 0.456
1.905IleHis: 1.905 ± 0.928
6.19IleIle: 6.19 ± 0.936
4.762IleLys: 4.762 ± 1.28
8.571IleLeu: 8.571 ± 0.016
0.0IleMet: 0.0 ± 0.0
1.905IleAsn: 1.905 ± 0.928
3.81IlePro: 3.81 ± 0.816
2.381IleGln: 2.381 ± 0.12
4.762IleArg: 4.762 ± 2.32
4.286IleSer: 4.286 ± 1.048
4.286IleThr: 4.286 ± 1.032
4.286IleVal: 4.286 ± 1.032
0.952IleTrp: 0.952 ± 0.464
2.381IleTyr: 2.381 ± 1.16
0.0IleXaa: 0.0 ± 0.0
Lys
5.714LysAla: 5.714 ± 0.336
0.0LysCys: 0.0 ± 0.0
2.381LysAsp: 2.381 ± 0.12
5.714LysGlu: 5.714 ± 3.456
2.381LysPhe: 2.381 ± 0.12
4.762LysGly: 4.762 ± 1.28
0.476LysHis: 0.476 ± 0.808
2.857LysIle: 2.857 ± 1.392
5.714LysLys: 5.714 ± 1.376
3.81LysLeu: 3.81 ± 1.264
3.81LysMet: 3.81 ± 2.304
3.81LysAsn: 3.81 ± 0.816
2.381LysPro: 2.381 ± 0.12
1.429LysGln: 1.429 ± 1.384
1.905LysArg: 1.905 ± 2.192
4.762LysSer: 4.762 ± 1.84
6.19LysThr: 6.19 ± 3.224
5.714LysVal: 5.714 ± 1.376
1.429LysTrp: 1.429 ± 0.696
4.286LysTyr: 4.286 ± 1.032
0.0LysXaa: 0.0 ± 0.0
Leu
6.19LeuAla: 6.19 ± 0.936
0.476LeuCys: 0.476 ± 0.232
7.619LeuAsp: 7.619 ± 1.632
5.714LeuGlu: 5.714 ± 1.376
4.762LeuPhe: 4.762 ± 2.32
6.667LeuGly: 6.667 ± 2.208
0.476LeuHis: 0.476 ± 0.232
6.667LeuIle: 6.667 ± 0.128
5.238LeuLys: 5.238 ± 4.728
4.762LeuLeu: 4.762 ± 1.28
2.857LeuMet: 2.857 ± 1.392
3.333LeuAsn: 3.333 ± 1.624
5.238LeuPro: 5.238 ± 1.512
2.381LeuGln: 2.381 ± 0.12
7.143LeuArg: 7.143 ± 0.68
9.048LeuSer: 9.048 ± 0.248
6.19LeuThr: 6.19 ± 1.144
6.667LeuVal: 6.667 ± 0.128
0.952LeuTrp: 0.952 ± 0.576
4.286LeuTyr: 4.286 ± 1.048
0.0LeuXaa: 0.0 ± 0.0
Met
0.952MetAla: 0.952 ± 0.464
0.0MetCys: 0.0 ± 0.0
0.952MetAsp: 0.952 ± 0.576
1.429MetGlu: 1.429 ± 0.696
0.952MetPhe: 0.952 ± 0.576
2.857MetGly: 2.857 ± 0.688
0.0MetHis: 0.0 ± 0.0
3.81MetIle: 3.81 ± 0.816
1.429MetLys: 1.429 ± 0.696
3.333MetLeu: 3.333 ± 1.624
1.429MetMet: 1.429 ± 0.696
0.0MetAsn: 0.0 ± 0.0
0.952MetPro: 0.952 ± 0.464
0.476MetGln: 0.476 ± 0.232
0.952MetArg: 0.952 ± 0.464
3.81MetSer: 3.81 ± 0.816
4.762MetThr: 4.762 ± 1.28
1.905MetVal: 1.905 ± 0.112
0.0MetTrp: 0.0 ± 0.0
0.476MetTyr: 0.476 ± 0.232
0.0MetXaa: 0.0 ± 0.0
Asn
2.381AsnAla: 2.381 ± 1.96
0.0AsnCys: 0.0 ± 0.0
1.905AsnAsp: 1.905 ± 0.112
1.429AsnGlu: 1.429 ± 0.696
3.81AsnPhe: 3.81 ± 1.856
3.333AsnGly: 3.333 ± 0.456
0.476AsnHis: 0.476 ± 0.232
3.81AsnIle: 3.81 ± 1.856
3.333AsnLys: 3.333 ± 1.624
6.19AsnLeu: 6.19 ± 0.936
0.952AsnMet: 0.952 ± 0.464
0.476AsnAsn: 0.476 ± 0.232
3.333AsnPro: 3.333 ± 0.584
0.476AsnGln: 0.476 ± 0.808
1.429AsnArg: 1.429 ± 0.696
4.286AsnSer: 4.286 ± 1.032
0.952AsnThr: 0.952 ± 0.464
1.905AsnVal: 1.905 ± 0.928
0.952AsnTrp: 0.952 ± 0.464
1.905AsnTyr: 1.905 ± 0.112
0.0AsnXaa: 0.0 ± 0.0
Pro
0.952ProAla: 0.952 ± 1.616
0.0ProCys: 0.0 ± 0.0
2.381ProAsp: 2.381 ± 0.12
3.81ProGlu: 3.81 ± 0.816
2.381ProPhe: 2.381 ± 0.12
4.762ProGly: 4.762 ± 2.88
0.0ProHis: 0.0 ± 0.0
2.381ProIle: 2.381 ± 0.92
2.857ProLys: 2.857 ± 0.688
4.762ProLeu: 4.762 ± 0.24
1.429ProMet: 1.429 ± 0.346
2.857ProAsn: 2.857 ± 1.392
3.81ProPro: 3.81 ± 0.224
2.857ProGln: 2.857 ± 1.728
2.857ProArg: 2.857 ± 0.352
2.857ProSer: 2.857 ± 0.688
1.905ProThr: 1.905 ± 0.928
2.857ProVal: 2.857 ± 0.688
0.0ProTrp: 0.0 ± 0.0
0.476ProTyr: 0.476 ± 0.232
0.0ProXaa: 0.0 ± 0.0
Gln
3.81GlnAla: 3.81 ± 2.304
0.0GlnCys: 0.0 ± 0.0
1.429GlnAsp: 1.429 ± 0.696
1.905GlnGlu: 1.905 ± 0.928
0.952GlnPhe: 0.952 ± 1.616
0.952GlnGly: 0.952 ± 0.464
0.476GlnHis: 0.476 ± 0.232
1.429GlnIle: 1.429 ± 1.384
1.429GlnLys: 1.429 ± 0.344
1.905GlnLeu: 1.905 ± 0.928
0.476GlnMet: 0.476 ± 0.232
0.476GlnAsn: 0.476 ± 0.232
0.0GlnPro: 0.0 ± 0.0
1.429GlnGln: 1.429 ± 1.384
1.429GlnArg: 1.429 ± 0.344
2.381GlnSer: 2.381 ± 0.92
3.81GlnThr: 3.81 ± 0.816
1.905GlnVal: 1.905 ± 1.152
0.952GlnTrp: 0.952 ± 0.464
0.476GlnTyr: 0.476 ± 0.808
0.0GlnXaa: 0.0 ± 0.0
Arg
2.381ArgAla: 2.381 ± 0.12
0.0ArgCys: 0.0 ± 0.0
1.905ArgAsp: 1.905 ± 0.112
1.429ArgGlu: 1.429 ± 0.344
2.857ArgPhe: 2.857 ± 0.352
3.333ArgGly: 3.333 ± 0.584
0.952ArgHis: 0.952 ± 0.464
4.286ArgIle: 4.286 ± 1.048
8.571ArgLys: 8.571 ± 1.024
6.667ArgLeu: 6.667 ± 0.128
1.429ArgMet: 1.429 ± 0.696
4.286ArgAsn: 4.286 ± 2.072
1.429ArgPro: 1.429 ± 0.344
1.905ArgGln: 1.905 ± 2.192
1.905ArgArg: 1.905 ± 0.112
3.333ArgSer: 3.333 ± 0.584
3.81ArgThr: 3.81 ± 0.816
3.333ArgVal: 3.333 ± 0.456
0.476ArgTrp: 0.476 ± 0.232
0.952ArgTyr: 0.952 ± 0.576
0.0ArgXaa: 0.0 ± 0.0
Ser
2.857SerAla: 2.857 ± 1.392
0.476SerCys: 0.476 ± 0.232
5.714SerAsp: 5.714 ± 0.704
6.667SerGlu: 6.667 ± 1.952
3.333SerPhe: 3.333 ± 0.456
2.381SerGly: 2.381 ± 0.12
2.381SerHis: 2.381 ± 0.92
4.286SerIle: 4.286 ± 1.048
5.238SerLys: 5.238 ± 0.472
3.81SerLeu: 3.81 ± 1.264
0.952SerMet: 0.952 ± 0.464
2.381SerAsn: 2.381 ± 1.16
2.857SerPro: 2.857 ± 1.728
1.429SerGln: 1.429 ± 0.696
8.095SerArg: 8.095 ± 1.256
8.571SerSer: 8.571 ± 0.016
7.143SerThr: 7.143 ± 2.44
2.857SerVal: 2.857 ± 1.728
2.857SerTrp: 2.857 ± 2.768
2.381SerTyr: 2.381 ± 0.92
0.0SerXaa: 0.0 ± 0.0
Thr
3.333ThrAla: 3.333 ± 0.584
0.476ThrCys: 0.476 ± 0.232
2.381ThrAsp: 2.381 ± 0.92
3.81ThrGlu: 3.81 ± 0.224
4.286ThrPhe: 4.286 ± 0.008
4.286ThrGly: 4.286 ± 1.048
1.905ThrHis: 1.905 ± 0.112
3.333ThrIle: 3.333 ± 1.624
4.762ThrLys: 4.762 ± 0.8
7.143ThrLeu: 7.143 ± 1.4
0.476ThrMet: 0.476 ± 0.232
3.333ThrAsn: 3.333 ± 1.624
4.762ThrPro: 4.762 ± 0.8
1.905ThrGln: 1.905 ± 0.112
2.857ThrArg: 2.857 ± 0.688
3.81ThrSer: 3.81 ± 2.304
3.333ThrThr: 3.333 ± 0.456
3.333ThrVal: 3.333 ± 0.456
3.81ThrTrp: 3.81 ± 1.856
2.381ThrTyr: 2.381 ± 1.16
0.0ThrXaa: 0.0 ± 0.0
Val
5.238ValAla: 5.238 ± 0.472
0.476ValCys: 0.476 ± 0.808
2.381ValAsp: 2.381 ± 0.92
0.952ValGlu: 0.952 ± 0.464
5.238ValPhe: 5.238 ± 1.512
0.952ValGly: 0.952 ± 0.464
0.476ValHis: 0.476 ± 0.232
6.19ValIle: 6.19 ± 0.936
4.286ValLys: 4.286 ± 3.112
4.762ValLeu: 4.762 ± 0.24
1.429ValMet: 1.429 ± 0.344
3.81ValAsn: 3.81 ± 1.264
1.429ValPro: 1.429 ± 1.384
2.381ValGln: 2.381 ± 1.16
4.286ValArg: 4.286 ± 2.072
4.286ValSer: 4.286 ± 2.088
6.19ValThr: 6.19 ± 0.936
7.619ValVal: 7.619 ± 1.632
1.905ValTrp: 1.905 ± 0.112
0.952ValTyr: 0.952 ± 0.464
0.0ValXaa: 0.0 ± 0.0
Trp
0.476TrpAla: 0.476 ± 0.232
0.952TrpCys: 0.952 ± 0.464
1.429TrpAsp: 1.429 ± 0.344
0.952TrpGlu: 0.952 ± 0.576
0.476TrpPhe: 0.476 ± 0.808
0.476TrpGly: 0.476 ± 0.232
0.0TrpHis: 0.0 ± 0.0
1.905TrpIle: 1.905 ± 0.112
0.952TrpLys: 0.952 ± 0.576
1.905TrpLeu: 1.905 ± 0.112
1.905TrpMet: 1.905 ± 0.928
1.905TrpAsn: 1.905 ± 0.928
1.429TrpPro: 1.429 ± 0.344
1.429TrpGln: 1.429 ± 0.344
2.381TrpArg: 2.381 ± 0.12
0.952TrpSer: 0.952 ± 0.576
0.952TrpThr: 0.952 ± 0.464
0.952TrpVal: 0.952 ± 0.464
0.0TrpTrp: 0.0 ± 0.0
0.952TrpTyr: 0.952 ± 0.464
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.333TyrAla: 3.333 ± 1.624
0.0TyrCys: 0.0 ± 0.0
1.905TyrAsp: 1.905 ± 0.928
2.857TyrGlu: 2.857 ± 0.688
1.905TyrPhe: 1.905 ± 0.112
1.429TyrGly: 1.429 ± 0.344
0.0TyrHis: 0.0 ± 0.0
4.286TyrIle: 4.286 ± 1.048
2.857TyrLys: 2.857 ± 1.728
3.333TyrLeu: 3.333 ± 0.584
2.381TyrMet: 2.381 ± 1.16
1.905TyrAsn: 1.905 ± 2.192
0.952TyrPro: 0.952 ± 0.576
0.476TyrGln: 0.476 ± 0.232
1.905TyrArg: 1.905 ± 0.928
1.429TyrSer: 1.429 ± 0.696
0.952TyrThr: 0.952 ± 0.464
2.857TyrVal: 2.857 ± 0.352
1.429TyrTrp: 1.429 ± 0.344
0.952TyrTyr: 0.952 ± 0.464
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2101 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski