Dictyoglomus turgidum (strain DSM 6724 / Z-1310)

Taxonomy: cellular organisms; Bacteria; Dictyoglomi; Dictyoglomia; Dictyoglomales; Dictyoglomaceae; Dictyoglomus; Dictyoglomus turgidum

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1743 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B8DZX5|B8DZX5_DICTD Peptidase U62 modulator of DNA gyrase OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=Dtur_0776 PE=3 SV=1
MM1 pKa = 7.59SAPKK5 pKa = 9.92VDD7 pKa = 3.97RR8 pKa = 11.84DD9 pKa = 3.59LCIGCGVCASLCPDD23 pKa = 2.98VFEE26 pKa = 5.99IDD28 pKa = 3.75EE29 pKa = 4.29EE30 pKa = 4.57GKK32 pKa = 10.76AIVRR36 pKa = 11.84EE37 pKa = 4.26GADD40 pKa = 3.78CEE42 pKa = 4.92SAGCCQDD49 pKa = 4.4AADD52 pKa = 4.39SCPVGAITLL61 pKa = 3.92

Molecular weight: 6.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B8DYS8|B8DYS8_DICTD Glycerol-3-phosphate responsive antiterminator GlpP OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=Dtur_0128 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.66QPKK8 pKa = 7.64KK9 pKa = 7.46HH10 pKa = 5.66HH11 pKa = 7.0RR12 pKa = 11.84KK13 pKa = 9.11RR14 pKa = 11.84VHH16 pKa = 6.17GFLARR21 pKa = 11.84MRR23 pKa = 11.84TPGGRR28 pKa = 11.84RR29 pKa = 11.84VIKK32 pKa = 10.12RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.57GRR39 pKa = 11.84KK40 pKa = 8.88RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1743

0

1743

571687

31

1427

328.0

37.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.222 ± 0.051

0.692 ± 0.018

4.847 ± 0.036

8.217 ± 0.066

5.07 ± 0.046

6.678 ± 0.053

1.376 ± 0.021

9.736 ± 0.059

8.577 ± 0.053

10.427 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.973 ± 0.024

4.724 ± 0.044

4.014 ± 0.029

2.179 ± 0.027

4.461 ± 0.039

5.617 ± 0.044

4.214 ± 0.037

6.527 ± 0.053

1.117 ± 0.023

4.335 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski