Chryseobacterium sp. (strain P1-3)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A086F321|A0A086F321_CHRP1 LysM domain-containing protein OS=Chryseobacterium sp. (strain P1-3) OX=1517683 GN=HX13_21015 PE=4 SV=1
MM1 pKa = 7.9DD2 pKa = 4.96KK3 pKa = 10.41EE4 pKa = 4.58ISHH7 pKa = 6.95FWLGYY12 pKa = 9.24FKK14 pKa = 11.19NEE16 pKa = 3.26EE17 pKa = 3.74DD18 pKa = 4.04FYY20 pKa = 11.82AFVEE24 pKa = 4.06EE25 pKa = 4.47DD26 pKa = 3.04EE27 pKa = 4.68NYY29 pKa = 10.32YY30 pKa = 10.82LEE32 pKa = 5.44EE33 pKa = 4.13EE34 pKa = 4.62TEE36 pKa = 4.0DD37 pKa = 3.6QYY39 pKa = 12.09VSKK42 pKa = 10.26FAEE45 pKa = 4.11SQNIKK50 pKa = 9.97WFDD53 pKa = 3.73DD54 pKa = 3.71DD55 pKa = 4.26FIEE58 pKa = 5.38YY59 pKa = 10.48GFEE62 pKa = 3.89DD63 pKa = 4.3EE64 pKa = 5.66RR65 pKa = 11.84LGIYY69 pKa = 10.1EE70 pKa = 4.24KK71 pKa = 10.72FSEE74 pKa = 4.66YY75 pKa = 10.74SYY77 pKa = 11.56ADD79 pKa = 2.83QWLPLLEE86 pKa = 4.19QKK88 pKa = 10.9LNEE91 pKa = 4.84LGLDD95 pKa = 3.62TPVNAIIFASRR106 pKa = 11.84FVIPNPVSVDD116 pKa = 3.23GEE118 pKa = 4.43EE119 pKa = 3.83NKK121 pKa = 10.47LYY123 pKa = 10.73YY124 pKa = 9.86IGEE127 pKa = 4.13IEE129 pKa = 4.58FEE131 pKa = 4.39VV132 pKa = 3.47

Molecular weight: 15.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A086F6F9|A0A086F6F9_CHRP1 TonB-dependent receptor OS=Chryseobacterium sp. (strain P1-3) OX=1517683 GN=HX13_10355 PE=3 SV=1
MM1 pKa = 7.75IYY3 pKa = 10.33FATKK7 pKa = 9.81FEE9 pKa = 4.39KK10 pKa = 10.43VKK12 pKa = 10.52IMKK15 pKa = 10.57SMFKK19 pKa = 10.23IIGAGVVMLMLSSCIVHH36 pKa = 6.29EE37 pKa = 3.97PHH39 pKa = 6.79GRR41 pKa = 11.84RR42 pKa = 11.84MPPGHH47 pKa = 7.29AKK49 pKa = 10.14RR50 pKa = 11.84FYY52 pKa = 10.33GGSARR57 pKa = 11.84YY58 pKa = 7.82YY59 pKa = 11.11APGHH63 pKa = 4.87VKK65 pKa = 9.95KK66 pKa = 11.03VYY68 pKa = 8.86IYY70 pKa = 9.92EE71 pKa = 4.41DD72 pKa = 3.39RR73 pKa = 11.84GHH75 pKa = 5.98HH76 pKa = 5.43HH77 pKa = 7.26RR78 pKa = 11.84GRR80 pKa = 11.84GRR82 pKa = 11.84GHH84 pKa = 6.32HH85 pKa = 6.07RR86 pKa = 3.44

Molecular weight: 9.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3118

0

3118

889964

42

2742

285.4

32.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.358 ± 0.041

0.759 ± 0.013

5.302 ± 0.027

6.55 ± 0.054

5.232 ± 0.038

6.568 ± 0.043

1.803 ± 0.02

7.876 ± 0.045

8.002 ± 0.044

9.019 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.399 ± 0.024

6.108 ± 0.047

3.552 ± 0.028

3.594 ± 0.026

3.464 ± 0.027

6.478 ± 0.04

5.615 ± 0.042

5.982 ± 0.031

1.065 ± 0.016

4.278 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski