Okra leaf curl India virus [India:Sonipat EL14A:2006]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus; Okra leaf curl India virus

Average proteome isoelectric point is 7.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7BNN2|E7BNN2_9GEMI AC4 protein OS=Okra leaf curl India virus [India:Sonipat EL14A:2006] OX=908124 GN=AC4 PE=3 SV=1
MM1 pKa = 7.32PPKK4 pKa = 10.41RR5 pKa = 11.84FLINSKK11 pKa = 10.69NYY13 pKa = 8.83FLTYY17 pKa = 9.19PKK19 pKa = 10.53CSLTKK24 pKa = 10.66EE25 pKa = 4.11EE26 pKa = 5.04ALSQIKK32 pKa = 10.16NFQTPTSKK40 pKa = 10.57KK41 pKa = 8.61YY42 pKa = 10.77IKK44 pKa = 9.74ICRR47 pKa = 11.84EE48 pKa = 3.53LHH50 pKa = 6.26EE51 pKa = 4.93NGEE54 pKa = 4.28PHH56 pKa = 6.66LHH58 pKa = 6.03VLIQFEE64 pKa = 4.78GKK66 pKa = 9.95YY67 pKa = 9.77KK68 pKa = 10.46CQNQRR73 pKa = 11.84FFDD76 pKa = 3.97LVSPSRR82 pKa = 11.84SAHH85 pKa = 4.9FHH87 pKa = 6.45PNIQGAKK94 pKa = 9.25SSSDD98 pKa = 3.11VKK100 pKa = 11.24SYY102 pKa = 10.79IDD104 pKa = 3.7KK105 pKa = 11.33DD106 pKa = 3.49GDD108 pKa = 3.67TLEE111 pKa = 4.14WGEE114 pKa = 3.84FQIDD118 pKa = 3.21GRR120 pKa = 11.84SARR123 pKa = 11.84GGQQTANDD131 pKa = 3.82ADD133 pKa = 3.88AAALNAGSKK142 pKa = 10.29SEE144 pKa = 3.84ALRR147 pKa = 11.84VIKK150 pKa = 10.21EE151 pKa = 4.18LAPKK155 pKa = 10.3DD156 pKa = 3.74YY157 pKa = 11.2VLQFHH162 pKa = 6.76NLNANLDD169 pKa = 4.29RR170 pKa = 11.84IFTPPVEE177 pKa = 4.67VYY179 pKa = 10.36VSPFPSSSFDD189 pKa = 3.4QVPEE193 pKa = 3.98EE194 pKa = 4.13LEE196 pKa = 3.58EE197 pKa = 3.9WAAEE201 pKa = 4.15NVVDD205 pKa = 5.13AAARR209 pKa = 11.84PHH211 pKa = 6.61RR212 pKa = 11.84PQSIVIEE219 pKa = 4.44GDD221 pKa = 3.12SRR223 pKa = 11.84TGKK226 pKa = 8.52TMWARR231 pKa = 11.84SLGPHH236 pKa = 5.7NHH238 pKa = 6.54LCGHH242 pKa = 7.27LDD244 pKa = 4.11LSPKK248 pKa = 10.15VYY250 pKa = 11.03SNDD253 pKa = 2.57AWFTIIDD260 pKa = 4.34DD261 pKa = 4.01VDD263 pKa = 3.34PHH265 pKa = 5.85YY266 pKa = 11.0LKK268 pKa = 10.69HH269 pKa = 6.21FKK271 pKa = 10.73EE272 pKa = 4.38FMEE275 pKa = 4.94AQRR278 pKa = 11.84DD279 pKa = 3.76WQSDD283 pKa = 3.44TKK285 pKa = 10.79YY286 pKa = 10.73GKK288 pKa = 9.12PVHH291 pKa = 6.47IKK293 pKa = 10.76GGIPTIFLCNPGPNGSYY310 pKa = 10.57KK311 pKa = 10.47EE312 pKa = 4.25FSDD315 pKa = 3.73EE316 pKa = 4.51AKK318 pKa = 10.88NSALKK323 pKa = 10.47AWALKK328 pKa = 9.77NAAFVFLTQPLYY340 pKa = 11.2SGTNQSSTQGSEE352 pKa = 3.58EE353 pKa = 4.12SAQEE357 pKa = 4.12EE358 pKa = 4.72TSGPP362 pKa = 3.66

Molecular weight: 40.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7BNM9|E7BNM9_9GEMI Replication enhancer OS=Okra leaf curl India virus [India:Sonipat EL14A:2006] OX=908124 GN=AC3 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.52IVISTPASKK16 pKa = 10.29VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.11SPYY27 pKa = 8.62STRR30 pKa = 11.84AVAPTVRR37 pKa = 11.84VTKK40 pKa = 10.7SRR42 pKa = 11.84MWANRR47 pKa = 11.84PMYY50 pKa = 9.66RR51 pKa = 11.84KK52 pKa = 8.9PRR54 pKa = 11.84MYY56 pKa = 10.28RR57 pKa = 11.84IYY59 pKa = 10.41RR60 pKa = 11.84SPDD63 pKa = 3.0VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.35VQSFDD78 pKa = 3.26AKK80 pKa = 11.06NDD82 pKa = 3.27IGHH85 pKa = 6.11MGKK88 pKa = 10.22VICLSDD94 pKa = 3.33VTRR97 pKa = 11.84GIGLTHH103 pKa = 6.67RR104 pKa = 11.84VGKK107 pKa = 9.78RR108 pKa = 11.84FCVKK112 pKa = 10.54SLICQEE118 pKa = 4.1NIKK121 pKa = 9.25TKK123 pKa = 10.16NHH125 pKa = 5.78TNSVMFFLVRR135 pKa = 11.84DD136 pKa = 3.84RR137 pKa = 11.84RR138 pKa = 11.84PVDD141 pKa = 3.13KK142 pKa = 10.28PQDD145 pKa = 3.56FGEE148 pKa = 4.33VFNMFDD154 pKa = 4.29NEE156 pKa = 4.11PSTATVKK163 pKa = 10.57NSHH166 pKa = 6.59RR167 pKa = 11.84DD168 pKa = 3.15RR169 pKa = 11.84YY170 pKa = 9.17QVLRR174 pKa = 11.84KK175 pKa = 8.43WHH177 pKa = 5.58ATVTGGQYY185 pKa = 10.85ASKK188 pKa = 10.24EE189 pKa = 3.73QALVKK194 pKa = 10.7KK195 pKa = 9.81FVKK198 pKa = 9.9VNNYY202 pKa = 7.69VVYY205 pKa = 10.15DD206 pKa = 3.41QRR208 pKa = 11.84EE209 pKa = 3.68ARR211 pKa = 11.84KK212 pKa = 9.82YY213 pKa = 11.04DD214 pKa = 3.32NHH216 pKa = 5.54TQNALMLYY224 pKa = 7.36MACTHH229 pKa = 7.06ASNPVYY235 pKa = 9.86ATLKK239 pKa = 9.47IRR241 pKa = 11.84IYY243 pKa = 10.64FYY245 pKa = 11.34DD246 pKa = 3.32SVTNN250 pKa = 3.98

Molecular weight: 28.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1117

100

362

186.2

21.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.192 ± 1.105

2.417 ± 0.657

4.924 ± 0.446

4.745 ± 0.945

4.297 ± 0.662

5.013 ± 0.393

3.85 ± 0.704

4.924 ± 0.705

5.73 ± 1.168

7.162 ± 0.945

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.88 ± 0.564

6.088 ± 0.635

6.177 ± 0.586

5.013 ± 0.755

6.714 ± 1.333

9.221 ± 1.807

5.909 ± 1.293

5.73 ± 1.252

1.253 ± 0.178

3.76 ± 0.584
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski