Silurus glanis circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; European catfish circovirus

Average proteome isoelectric point is 8.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I1TEL3|I1TEL3_9CIRC ATP-dependent helicase Rep OS=Silurus glanis circovirus OX=1126411 GN=Rep PE=3 SV=1
MM1 pKa = 7.91PKK3 pKa = 9.78YY4 pKa = 10.12QKK6 pKa = 10.49KK7 pKa = 10.37SPGKK11 pKa = 8.16EE12 pKa = 3.46NRR14 pKa = 11.84SPVQRR19 pKa = 11.84PKK21 pKa = 10.31QARR24 pKa = 11.84PPKK27 pKa = 10.2KK28 pKa = 8.74EE29 pKa = 4.09APHH32 pKa = 5.64KK33 pKa = 10.6RR34 pKa = 11.84YY35 pKa = 10.58VFTLNNYY42 pKa = 6.09TTEE45 pKa = 4.01EE46 pKa = 4.19YY47 pKa = 11.25ARR49 pKa = 11.84IDD51 pKa = 3.5NVGADD56 pKa = 3.37GLARR60 pKa = 11.84YY61 pKa = 7.49MITGKK66 pKa = 10.22EE67 pKa = 3.96VGEE70 pKa = 4.45NGTPHH75 pKa = 6.3LQGFINLKK83 pKa = 7.92VKK85 pKa = 10.44KK86 pKa = 9.73RR87 pKa = 11.84FSQIKK92 pKa = 8.89EE93 pKa = 3.9MLGSRR98 pKa = 11.84CHH100 pKa = 6.22IEE102 pKa = 3.89KK103 pKa = 10.8ARR105 pKa = 11.84GTDD108 pKa = 3.27LEE110 pKa = 4.07NRR112 pKa = 11.84VYY114 pKa = 10.49CSKK117 pKa = 10.7EE118 pKa = 3.69GSFQEE123 pKa = 4.31YY124 pKa = 10.05GSPVGQGKK132 pKa = 10.26RR133 pKa = 11.84SDD135 pKa = 3.55LDD137 pKa = 3.44AAAEE141 pKa = 4.11TLRR144 pKa = 11.84TSLGDD149 pKa = 3.5LRR151 pKa = 11.84SVAEE155 pKa = 4.72LYY157 pKa = 9.71PSQFIRR163 pKa = 11.84YY164 pKa = 8.32GRR166 pKa = 11.84GLRR169 pKa = 11.84DD170 pKa = 3.38YY171 pKa = 11.31ASVLGLVKK179 pKa = 10.53PRR181 pKa = 11.84DD182 pKa = 3.64FKK184 pKa = 11.93ANVTVITGPPGCGKK198 pKa = 10.03SRR200 pKa = 11.84YY201 pKa = 9.19AADD204 pKa = 3.77HH205 pKa = 6.63ASGTPYY211 pKa = 10.56YY212 pKa = 10.2KK213 pKa = 10.28PRR215 pKa = 11.84GDD217 pKa = 2.86WWDD220 pKa = 4.1GYY222 pKa = 8.5HH223 pKa = 6.5TNATVILDD231 pKa = 4.8DD232 pKa = 4.05FYY234 pKa = 11.92GWIKK238 pKa = 10.27LDD240 pKa = 3.44EE241 pKa = 4.24MLRR244 pKa = 11.84ICDD247 pKa = 4.21RR248 pKa = 11.84YY249 pKa = 8.57PHH251 pKa = 5.45QVPVKK256 pKa = 9.28GGYY259 pKa = 7.91VQFLARR265 pKa = 11.84DD266 pKa = 3.48IFITSNKK273 pKa = 8.76PVEE276 pKa = 4.2EE277 pKa = 4.19WFPNCDD283 pKa = 2.87CSALFRR289 pKa = 11.84RR290 pKa = 11.84INVYY294 pKa = 7.92LTWNDD299 pKa = 2.75EE300 pKa = 4.39CFVEE304 pKa = 6.43RR305 pKa = 11.84IDD307 pKa = 3.68TPYY310 pKa = 10.74EE311 pKa = 3.83INFF314 pKa = 3.65

Molecular weight: 35.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I1TEL3|I1TEL3_9CIRC ATP-dependent helicase Rep OS=Silurus glanis circovirus OX=1126411 GN=Rep PE=3 SV=1
MM1 pKa = 7.67AFRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84TFRR9 pKa = 11.84RR10 pKa = 11.84PIRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84MHH17 pKa = 5.71RR18 pKa = 11.84RR19 pKa = 11.84TRR21 pKa = 11.84GRR23 pKa = 11.84RR24 pKa = 11.84MIRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84SRR31 pKa = 11.84RR32 pKa = 11.84SRR34 pKa = 11.84PMGMRR39 pKa = 11.84SFNFRR44 pKa = 11.84AIKK47 pKa = 10.13LDD49 pKa = 3.9HH50 pKa = 6.81IKK52 pKa = 10.94VGGNSSVTGVLTFCLKK68 pKa = 10.65DD69 pKa = 3.69FCANFLNWDD78 pKa = 3.7YY79 pKa = 11.72YY80 pKa = 10.72RR81 pKa = 11.84FNAVVVKK88 pKa = 7.75FVPQNTAQFDD98 pKa = 3.9QEE100 pKa = 4.62GGLSTVCATAVDD112 pKa = 4.19YY113 pKa = 11.29DD114 pKa = 4.63DD115 pKa = 4.37EE116 pKa = 4.79SKK118 pKa = 9.26PTSVRR123 pKa = 11.84QLMMMQNARR132 pKa = 11.84TFRR135 pKa = 11.84TGVGHH140 pKa = 6.28SRR142 pKa = 11.84KK143 pKa = 9.12FKK145 pKa = 10.26PKK147 pKa = 7.63MTFSVVEE154 pKa = 4.22KK155 pKa = 10.01VDD157 pKa = 3.63SVTTYY162 pKa = 11.33APAGLWMGGNRR173 pKa = 11.84KK174 pKa = 7.67WWLNTGYY181 pKa = 10.53SEE183 pKa = 5.18VKK185 pKa = 10.51FLGLKK190 pKa = 10.17YY191 pKa = 10.9AMQNMSANDD200 pKa = 2.86IHH202 pKa = 6.46YY203 pKa = 10.1QVLIKK208 pKa = 10.71GYY210 pKa = 10.39FSFKK214 pKa = 10.68SPLITAPTVRR224 pKa = 11.84GEE226 pKa = 4.04HH227 pKa = 6.09

Molecular weight: 26.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

541

227

314

270.5

31.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.73 ± 0.002

1.848 ± 0.344

5.176 ± 0.791

4.436 ± 1.459

5.36 ± 1.103

7.763 ± 0.467

2.033 ± 0.111

4.067 ± 0.642

6.839 ± 0.439

5.915 ± 0.411

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.957 ± 1.521

4.621 ± 0.147

5.176 ± 1.079

3.142 ± 0.038

9.797 ± 1.658

5.73 ± 0.573

5.915 ± 0.74

6.839 ± 0.712

1.664 ± 0.064

4.991 ± 0.958
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski