Rochambeau virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Curiovirus; Rochambeau curiovirus

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R216|A0A0D3R216_9RHAB Glycoprotein OS=Rochambeau virus OX=380435 PE=4 SV=1
MM1 pKa = 7.22KK2 pKa = 10.33VVFIIYY8 pKa = 8.89TLLFSHH14 pKa = 6.94LNSSEE19 pKa = 3.87IFDD22 pKa = 5.11DD23 pKa = 4.7EE24 pKa = 5.02EE25 pKa = 4.71SSCDD29 pKa = 3.53GNEE32 pKa = 4.09LEE34 pKa = 5.79KK35 pKa = 10.53LQCMLDD41 pKa = 3.68SLNSGGVLEE50 pKa = 5.24SVPQTSTSPQGVGAIISGIEE70 pKa = 3.88KK71 pKa = 10.33PSFFLQLFLPFAMAFRR87 pKa = 11.84DD88 pKa = 4.12SIVV91 pKa = 2.78

Molecular weight: 9.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1V8|A0A0D3R1V8_9RHAB Phosphoprotein OS=Rochambeau virus OX=380435 PE=4 SV=1
MM1 pKa = 7.48EE2 pKa = 5.56PVLEE6 pKa = 4.59KK7 pKa = 10.94NWGGNILEE15 pKa = 4.6GFGKK19 pKa = 9.58YY20 pKa = 7.09WVEE23 pKa = 3.44VRR25 pKa = 11.84YY26 pKa = 8.72WVSVSFWFFIGIILIKK42 pKa = 10.02IIKK45 pKa = 9.51SLVLIGEE52 pKa = 4.7KK53 pKa = 9.89IVSCSGAIYY62 pKa = 10.13SIIKK66 pKa = 8.79KK67 pKa = 9.11HH68 pKa = 5.63CLRR71 pKa = 11.84IKK73 pKa = 9.1RR74 pKa = 11.84TTRR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84KK81 pKa = 9.14IKK83 pKa = 9.86KK84 pKa = 8.28HH85 pKa = 5.0HH86 pKa = 6.99HH87 pKa = 6.24NDD89 pKa = 3.23PTRR92 pKa = 4.41

Molecular weight: 10.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11

0

11

4388

74

2137

398.9

45.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.441 ± 0.415

1.755 ± 0.31

6.199 ± 0.524

8.159 ± 0.566

4.307 ± 0.507

6.085 ± 0.289

2.119 ± 0.223

6.996 ± 0.282

7.976 ± 0.548

10.255 ± 0.606

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.29

4.444 ± 0.328

3.874 ± 0.385

2.302 ± 0.18

5.743 ± 0.618

8.706 ± 0.44

4.626 ± 0.317

5.082 ± 0.364

1.96 ± 0.12

3.418 ± 0.225
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski