Gordonia phage Fosterous

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vividuovirus; unclassified Vividuovirus

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 87 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G3M9R2|A0A3G3M9R2_9CAUD Uncharacterized protein OS=Gordonia phage Fosterous OX=2483668 GN=47 PE=4 SV=1
MM1 pKa = 7.52SWTEE5 pKa = 3.81DD6 pKa = 3.54CNACGHH12 pKa = 5.69THH14 pKa = 7.4PDD16 pKa = 3.65EE17 pKa = 4.91CDD19 pKa = 3.81CPCGCTMHH27 pKa = 7.33PVDD30 pKa = 3.83TWDD33 pKa = 3.45MTEE36 pKa = 4.44LPGDD40 pKa = 3.66EE41 pKa = 4.19

Molecular weight: 4.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G3M9P3|A0A3G3M9P3_9CAUD Uncharacterized protein OS=Gordonia phage Fosterous OX=2483668 GN=27 PE=4 SV=1
MM1 pKa = 7.09TADD4 pKa = 3.68PAIAAAQRR12 pKa = 11.84AMSNPEE18 pKa = 4.02VEE20 pKa = 4.61AAWIDD25 pKa = 3.58GGNDD29 pKa = 3.24LAIAAARR36 pKa = 11.84EE37 pKa = 3.88ALAPLRR43 pKa = 11.84KK44 pKa = 9.32LHH46 pKa = 6.8RR47 pKa = 11.84PTRR50 pKa = 11.84SNEE53 pKa = 3.55WQHH56 pKa = 6.76AKK58 pKa = 9.2TKK60 pKa = 10.59CPAGHH65 pKa = 7.54DD66 pKa = 3.81YY67 pKa = 11.49AGDD70 pKa = 3.6NLIVVQRR77 pKa = 11.84PNRR80 pKa = 11.84AGPEE84 pKa = 4.0RR85 pKa = 11.84RR86 pKa = 11.84CRR88 pKa = 11.84TCTRR92 pKa = 11.84ATEE95 pKa = 4.0RR96 pKa = 11.84RR97 pKa = 11.84SRR99 pKa = 11.84ARR101 pKa = 11.84KK102 pKa = 7.61TGVV105 pKa = 2.67

Molecular weight: 11.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

87

0

87

18839

37

1607

216.5

23.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.002 ± 0.406

0.897 ± 0.146

7.495 ± 0.457

5.664 ± 0.379

2.458 ± 0.16

8.626 ± 0.399

2.203 ± 0.191

4.523 ± 0.255

2.505 ± 0.195

7.368 ± 0.26

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.099

2.606 ± 0.149

6.28 ± 0.258

3.79 ± 0.181

7.644 ± 0.431

4.761 ± 0.242

6.8 ± 0.283

7.819 ± 0.274

2.144 ± 0.13

2.198 ± 0.131
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski