Carnobacterium sp. CP1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium; unclassified Carnobacterium

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2388 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U3PKH1|A0A0U3PKH1_9LACT Uncharacterized protein OS=Carnobacterium sp. CP1 OX=1564681 GN=NY10_143 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 4.67GSDD5 pKa = 4.0YY6 pKa = 11.59YY7 pKa = 11.35KK8 pKa = 9.9VTQDD12 pKa = 3.09KK13 pKa = 10.54EE14 pKa = 4.12GRR16 pKa = 11.84KK17 pKa = 8.45NQEE20 pKa = 3.38SEE22 pKa = 3.74IDD24 pKa = 3.63VDD26 pKa = 3.97GKK28 pKa = 10.65DD29 pKa = 3.49YY30 pKa = 10.89YY31 pKa = 11.47LLYY34 pKa = 10.41IFPNPDD40 pKa = 3.57DD41 pKa = 3.84DD42 pKa = 4.47TKK44 pKa = 11.34VDD46 pKa = 4.32LYY48 pKa = 11.08YY49 pKa = 10.86EE50 pKa = 4.76EE51 pKa = 4.74YY52 pKa = 11.18

Molecular weight: 6.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U3NMG9|A0A0U3NMG9_9LACT Uncharacterized protein OS=Carnobacterium sp. CP1 OX=1564681 GN=NY10_1783 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.7QPKK8 pKa = 9.07KK9 pKa = 9.62RR10 pKa = 11.84KK11 pKa = 8.35RR12 pKa = 11.84QKK14 pKa = 9.88LHH16 pKa = 5.81GFRR19 pKa = 11.84KK20 pKa = 10.03RR21 pKa = 11.84MSTKK25 pKa = 9.83NGRR28 pKa = 11.84NVLQSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.13GRR39 pKa = 11.84KK40 pKa = 8.94SLSAA44 pKa = 3.86

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2388

0

2388

715207

37

1697

299.5

33.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.571 ± 0.057

0.52 ± 0.012

5.298 ± 0.037

7.679 ± 0.063

4.399 ± 0.04

6.788 ± 0.05

1.784 ± 0.023

7.71 ± 0.048

6.896 ± 0.046

9.8 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.767 ± 0.022

4.528 ± 0.032

3.417 ± 0.026

3.856 ± 0.042

3.581 ± 0.04

6.0 ± 0.044

6.038 ± 0.037

6.982 ± 0.041

0.86 ± 0.016

3.527 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski