Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas oryzae; Xanthomonas oryzae pv. oryzae

Average proteome isoelectric point is 7.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4382 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5H3V1|Q5H3V1_XANOR Polyphosphate-selective porin O OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=oprO PE=4 SV=1
MM1 pKa = 7.27GWDD4 pKa = 3.34NVAPPLQDD12 pKa = 2.79RR13 pKa = 11.84DD14 pKa = 3.87YY15 pKa = 11.18PMSEE19 pKa = 4.15TSTTTYY25 pKa = 8.42RR26 pKa = 11.84TWMCVVCGFLYY37 pKa = 10.74HH38 pKa = 6.64EE39 pKa = 5.21ADD41 pKa = 5.04GIPEE45 pKa = 3.97EE46 pKa = 5.35GIAPGTRR53 pKa = 11.84WQDD56 pKa = 3.42VPDD59 pKa = 3.38TWTCPDD65 pKa = 3.75CGVTKK70 pKa = 10.56EE71 pKa = 4.09DD72 pKa = 3.9FEE74 pKa = 4.44MVEE77 pKa = 3.85IDD79 pKa = 3.32

Molecular weight: 9.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5GU19|Q5GU19_XANOR Exodeoxyribonuclease III OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=xthA1 PE=3 SV=1
MM1 pKa = 7.16RR2 pKa = 11.84VAWRR6 pKa = 11.84GGRR9 pKa = 11.84NAAGSTNLRR18 pKa = 11.84RR19 pKa = 11.84SFGAHH24 pKa = 5.74ARR26 pKa = 11.84TSTGLPHH33 pKa = 6.55KK34 pKa = 10.43QQ35 pKa = 2.92

Molecular weight: 3.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4382

0

4382

1408507

30

2941

321.4

35.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.697 ± 0.052

1.157 ± 0.014

5.485 ± 0.028

4.718 ± 0.031

3.092 ± 0.022

8.131 ± 0.038

2.684 ± 0.026

3.919 ± 0.026

2.859 ± 0.031

10.57 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.227 ± 0.019

2.534 ± 0.026

5.417 ± 0.026

4.657 ± 0.029

8.127 ± 0.042

5.606 ± 0.033

5.093 ± 0.034

7.201 ± 0.028

1.601 ± 0.017

2.224 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski