Desulfatibacillum aliphaticivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5198 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B8FAR4|B8FAR4_DESAL Methyltransferase type 12 OS=Desulfatibacillum aliphaticivorans OX=218208 GN=Dalk_1662 PE=4 SV=1
MM1 pKa = 7.63PCKK4 pKa = 10.43LYY6 pKa = 9.96WKK8 pKa = 10.21SFALSVLLLSFFIAFTGCSDD28 pKa = 4.83DD29 pKa = 6.22DD30 pKa = 4.03DD31 pKa = 4.33VLYY34 pKa = 11.2SGATSTGKK42 pKa = 10.4AVLGPLCGADD52 pKa = 3.32YY53 pKa = 11.1KK54 pKa = 11.39VFAYY58 pKa = 9.85PDD60 pKa = 3.62MKK62 pKa = 11.16NPIITGKK69 pKa = 9.14TSVSDD74 pKa = 4.26DD75 pKa = 3.49LSQAGLFSLPDD86 pKa = 3.46DD87 pKa = 4.2RR88 pKa = 11.84LADD91 pKa = 3.21GWLYY95 pKa = 10.69IMEE98 pKa = 4.48VTGGTDD104 pKa = 2.89VDD106 pKa = 4.17ADD108 pKa = 4.0DD109 pKa = 6.11DD110 pKa = 4.54GVIDD114 pKa = 5.44AAATPNLGTIHH125 pKa = 7.41LALQGEE131 pKa = 4.75TIKK134 pKa = 11.11KK135 pKa = 9.55EE136 pKa = 3.98GFRR139 pKa = 11.84VNILSEE145 pKa = 4.3LVYY148 pKa = 9.57QTVSFMLMAGYY159 pKa = 8.29PQSDD163 pKa = 3.86VIARR167 pKa = 11.84MNAAASRR174 pKa = 11.84LINQDD179 pKa = 2.75LDD181 pKa = 3.9GNGQIDD187 pKa = 4.38HH188 pKa = 7.5KK189 pKa = 11.21DD190 pKa = 3.16LAYY193 pKa = 9.7WEE195 pKa = 4.41PVNNRR200 pKa = 11.84GALVRR205 pKa = 11.84GWASITPCIDD215 pKa = 3.04AVHH218 pKa = 6.52NNDD221 pKa = 4.81DD222 pKa = 4.17LFSLAVNRR230 pKa = 11.84TSPQSALANTPGTALNVAVDD250 pKa = 3.47GGFAYY255 pKa = 10.62VADD258 pKa = 4.5ADD260 pKa = 4.27GGLHH264 pKa = 6.52VFDD267 pKa = 4.39TTDD270 pKa = 3.26PFDD273 pKa = 4.16PVLLGTAAMDD283 pKa = 3.94RR284 pKa = 11.84ARR286 pKa = 11.84DD287 pKa = 3.76VVISGTYY294 pKa = 10.19AYY296 pKa = 10.61VADD299 pKa = 4.56DD300 pKa = 4.2AEE302 pKa = 4.32GLKK305 pKa = 10.17IVDD308 pKa = 4.26AADD311 pKa = 3.89PSDD314 pKa = 3.77PQVVGVVDD322 pKa = 3.7TEE324 pKa = 3.95KK325 pKa = 10.99ARR327 pKa = 11.84AVVVRR332 pKa = 11.84GNYY335 pKa = 10.34AYY337 pKa = 10.89VADD340 pKa = 4.78DD341 pKa = 4.03ANGLRR346 pKa = 11.84VIDD349 pKa = 4.02VADD352 pKa = 3.89PANPQIVGTAPTVKK366 pKa = 10.55ANDD369 pKa = 3.14VALFGDD375 pKa = 4.49YY376 pKa = 11.06ACVADD381 pKa = 4.78DD382 pKa = 3.63VGGVKK387 pKa = 10.17VVDD390 pKa = 3.55IADD393 pKa = 3.94PANPQVVGTAATEE406 pKa = 4.26DD407 pKa = 3.6ASSAAIADD415 pKa = 4.56GYY417 pKa = 11.64AYY419 pKa = 10.74VADD422 pKa = 3.74SAFGIKK428 pKa = 10.03VVDD431 pKa = 4.78LSDD434 pKa = 3.24PTAPVVVGAASTGFSRR450 pKa = 11.84SMEE453 pKa = 3.97VFNRR457 pKa = 11.84VAYY460 pKa = 8.63VTGDD464 pKa = 3.04SDD466 pKa = 3.82GFKK469 pKa = 10.13MVDD472 pKa = 3.05VSDD475 pKa = 4.01PANPKK480 pKa = 10.21IIGTRR485 pKa = 11.84DD486 pKa = 3.07EE487 pKa = 4.63GDD489 pKa = 3.34TRR491 pKa = 11.84GLWIGDD497 pKa = 3.72NIAYY501 pKa = 8.92LANGYY506 pKa = 9.67QGLKK510 pKa = 8.55VTDD513 pKa = 3.27ITYY516 pKa = 10.16EE517 pKa = 3.98PNPQVIGCVNTADD530 pKa = 3.82AQDD533 pKa = 3.45AAFQGDD539 pKa = 4.04YY540 pKa = 10.97AYY542 pKa = 11.02VADD545 pKa = 4.52GAGGLAVVDD554 pKa = 4.31ISDD557 pKa = 3.91PANPVLIGSAPSTFAQGAAVQGDD580 pKa = 4.04YY581 pKa = 11.05AYY583 pKa = 11.03VADD586 pKa = 4.96GGDD589 pKa = 3.49GLRR592 pKa = 11.84IFDD595 pKa = 4.18VSDD598 pKa = 3.43PANPFEE604 pKa = 4.25TSVLDD609 pKa = 3.6TDD611 pKa = 4.32DD612 pKa = 4.49ANIVAVSGDD621 pKa = 3.66YY622 pKa = 10.82AYY624 pKa = 11.1VADD627 pKa = 5.04GSAGLRR633 pKa = 11.84VIDD636 pKa = 3.8VSNPYY641 pKa = 10.22SPQLKK646 pKa = 8.47GTLDD650 pKa = 3.17TRR652 pKa = 11.84SAYY655 pKa = 10.36DD656 pKa = 3.33VTVSGDD662 pKa = 3.22LAYY665 pKa = 11.06VGDD668 pKa = 4.5GMDD671 pKa = 3.53GLIIVDD677 pKa = 3.68VSDD680 pKa = 4.64PEE682 pKa = 4.17NPDD685 pKa = 4.18DD686 pKa = 5.58IGVLDD691 pKa = 4.38TFFADD696 pKa = 6.05DD697 pKa = 3.75IVLDD701 pKa = 3.86GNYY704 pKa = 10.39AYY706 pKa = 9.79IADD709 pKa = 4.57GPQGLKK715 pKa = 10.31VADD718 pKa = 4.04ISDD721 pKa = 3.77PTAPEE726 pKa = 3.44QKK728 pKa = 10.59AYY730 pKa = 11.06LDD732 pKa = 3.97TPNSCRR738 pKa = 11.84ALALSGNYY746 pKa = 9.86LYY748 pKa = 10.98AADD751 pKa = 5.11NGPDD755 pKa = 3.67MIIVDD760 pKa = 4.12VSDD763 pKa = 3.9PLNPVEE769 pKa = 4.23IAWVEE774 pKa = 4.09TLNVFYY780 pKa = 10.57RR781 pKa = 11.84LEE783 pKa = 3.89VHH785 pKa = 6.77EE786 pKa = 5.43GYY788 pKa = 10.86LYY790 pKa = 9.77LTSSEE795 pKa = 5.07LGLQVLKK802 pKa = 10.81AVPAPP807 pKa = 3.64

Molecular weight: 84.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B8FN68|B8FN68_DESAL Ion-translocating oxidoreductase complex subunit A OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rnfA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.24IKK11 pKa = 10.37RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.37GFLKK20 pKa = 10.63RR21 pKa = 11.84MSTKK25 pKa = 10.08AGRR28 pKa = 11.84RR29 pKa = 11.84IIKK32 pKa = 9.74RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.98RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5198

0

5198

1868736

31

15349

359.5

39.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.395 ± 0.05

1.331 ± 0.017

5.866 ± 0.048

6.594 ± 0.048

4.203 ± 0.034

7.969 ± 0.065

1.889 ± 0.017

5.917 ± 0.03

5.644 ± 0.057

9.571 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.97 ± 0.024

3.65 ± 0.033

4.612 ± 0.034

3.417 ± 0.02

4.971 ± 0.043

5.829 ± 0.038

4.941 ± 0.064

7.03 ± 0.037

1.194 ± 0.014

3.007 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski