Mulberry mosaic dwarf associated virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae

Average proteome isoelectric point is 7.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D5BTW9|A0A0D5BTW9_9GEMI V2 protein OS=Mulberry mosaic dwarf associated virus OX=1631303 PE=4 SV=1
MM1 pKa = 7.59ASSSNFRR8 pKa = 11.84LAAKK12 pKa = 10.11NVFLTFPQCPEE23 pKa = 3.95SITWVMSHH31 pKa = 7.42LLQILNSYY39 pKa = 6.28TVKK42 pKa = 9.67YY43 pKa = 10.74ACVAEE48 pKa = 4.75EE49 pKa = 3.91KK50 pKa = 10.78HH51 pKa = 6.71KK52 pKa = 11.14DD53 pKa = 3.82DD54 pKa = 4.22NSHH57 pKa = 5.57FHH59 pKa = 7.5AIVQLDD65 pKa = 3.72KK66 pKa = 11.18KK67 pKa = 11.2LEE69 pKa = 4.05TRR71 pKa = 11.84NPNFFDD77 pKa = 4.15LPQEE81 pKa = 4.42HH82 pKa = 7.05SSGTYY87 pKa = 9.12HH88 pKa = 7.52PNVQKK93 pKa = 10.63CSSPAAVRR101 pKa = 11.84KK102 pKa = 9.1YY103 pKa = 9.62IQKK106 pKa = 8.64EE107 pKa = 3.98GHH109 pKa = 6.37FIEE112 pKa = 6.01HH113 pKa = 6.84GEE115 pKa = 3.96FNTRR119 pKa = 11.84GRR121 pKa = 11.84SPVASAEE128 pKa = 4.26KK129 pKa = 10.25IFGEE133 pKa = 4.16ILTLATDD140 pKa = 3.81EE141 pKa = 4.59EE142 pKa = 5.12SFLALVRR149 pKa = 11.84EE150 pKa = 4.55RR151 pKa = 11.84RR152 pKa = 11.84PQDD155 pKa = 3.35YY156 pKa = 10.58VLRR159 pKa = 11.84WPSITGFARR168 pKa = 11.84DD169 pKa = 3.33HH170 pKa = 5.48YY171 pKa = 10.1RR172 pKa = 11.84RR173 pKa = 11.84RR174 pKa = 11.84SIPYY178 pKa = 7.95VPRR181 pKa = 11.84WTDD184 pKa = 3.76FPGLPEE190 pKa = 6.34PIQQWAKK197 pKa = 11.29DD198 pKa = 3.78NILFEE203 pKa = 4.94PEE205 pKa = 4.33SKK207 pKa = 9.99PDD209 pKa = 3.61RR210 pKa = 11.84PISLYY215 pKa = 9.8ICGPTRR221 pKa = 11.84SGKK224 pKa = 6.56TQWARR229 pKa = 11.84SLGRR233 pKa = 11.84HH234 pKa = 5.29NYY236 pKa = 7.43FTGSLSFLDD245 pKa = 3.88YY246 pKa = 11.47DD247 pKa = 5.47DD248 pKa = 4.8FALYY252 pKa = 10.64NVIDD256 pKa = 4.96DD257 pKa = 4.16IEE259 pKa = 4.33YY260 pKa = 10.95EE261 pKa = 4.34KK262 pKa = 10.76ISTSWFKK269 pKa = 11.37SLLGAQKK276 pKa = 10.67DD277 pKa = 3.7IILKK281 pKa = 9.29GKK283 pKa = 8.39YY284 pKa = 8.83MKK286 pKa = 10.46DD287 pKa = 3.32FRR289 pKa = 11.84ISGGIPCIVLVNEE302 pKa = 4.06DD303 pKa = 3.69MDD305 pKa = 3.95WVVRR309 pKa = 11.84MASTLKK315 pKa = 10.26PWFDD319 pKa = 4.71DD320 pKa = 3.66NVLVYY325 pKa = 10.71YY326 pKa = 9.85MSASDD331 pKa = 4.0KK332 pKa = 10.91FYY334 pKa = 11.37

Molecular weight: 38.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D5BV09|A0A0D5BV09_9GEMI Capsid protein OS=Mulberry mosaic dwarf associated virus OX=1631303 PE=3 SV=1
MM1 pKa = 7.46VITRR5 pKa = 11.84SSALRR10 pKa = 11.84SRR12 pKa = 11.84RR13 pKa = 11.84GWNPGTIPRR22 pKa = 11.84RR23 pKa = 11.84PRR25 pKa = 11.84TVRR28 pKa = 11.84VTRR31 pKa = 11.84VASAMRR37 pKa = 11.84TPWRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84GPRR46 pKa = 11.84SSLARR51 pKa = 11.84RR52 pKa = 11.84KK53 pKa = 9.49RR54 pKa = 11.84RR55 pKa = 11.84PINALGPVKK64 pKa = 10.48RR65 pKa = 11.84GTFGIKK71 pKa = 9.51LASINHH77 pKa = 5.99TGGNGYY83 pKa = 9.56HH84 pKa = 6.14LTHH87 pKa = 7.21FDD89 pKa = 4.44HH90 pKa = 7.7GDD92 pKa = 3.38DD93 pKa = 3.61TNQRR97 pKa = 11.84TGRR100 pKa = 11.84KK101 pKa = 8.85IKK103 pKa = 10.6INGINIRR110 pKa = 11.84GKK112 pKa = 10.76LYY114 pKa = 10.84LNNPRR119 pKa = 11.84TNSYY123 pKa = 10.5HH124 pKa = 7.26IVRR127 pKa = 11.84LWIIRR132 pKa = 11.84DD133 pKa = 3.63TRR135 pKa = 11.84PGSEE139 pKa = 3.84PVSFSSFMDD148 pKa = 3.23MHH150 pKa = 7.47DD151 pKa = 4.42NEE153 pKa = 5.02PMTAMVKK160 pKa = 10.18KK161 pKa = 10.37DD162 pKa = 2.82WGEE165 pKa = 3.75RR166 pKa = 11.84FQVLKK171 pKa = 10.82DD172 pKa = 3.56LTFHH176 pKa = 7.1LVGANGLSFNEE187 pKa = 4.44DD188 pKa = 3.04VVEE191 pKa = 4.55EE192 pKa = 4.12YY193 pKa = 10.88FKK195 pKa = 11.28FKK197 pKa = 10.84GYY199 pKa = 10.67VLYY202 pKa = 10.79NHH204 pKa = 7.07EE205 pKa = 5.1DD206 pKa = 3.52SGSLANVLEE215 pKa = 4.23NGIFLYY221 pKa = 10.7AATSHH226 pKa = 6.48PSEE229 pKa = 4.32NVTLTANCRR238 pKa = 11.84VYY240 pKa = 10.61FYY242 pKa = 10.91DD243 pKa = 5.07AEE245 pKa = 4.19

Molecular weight: 28.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1097

105

334

219.4

25.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.108 ± 0.329

2.005 ± 0.599

5.287 ± 0.464

5.834 ± 0.541

4.74 ± 0.516

5.287 ± 0.724

3.373 ± 0.345

5.378 ± 0.494

5.287 ± 0.541

7.475 ± 0.225

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.097 ± 0.311

4.74 ± 0.652

6.016 ± 0.655

3.464 ± 0.819

7.84 ± 0.869

8.204 ± 0.358

5.014 ± 0.533

5.925 ± 0.206

2.005 ± 0.314

3.92 ± 0.621
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski