Sulfodiicoccus acidiphilus

Taxonomy: cellular organisms; Archaea; TACK group; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfodiicoccus

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2410 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A348B5D5|A0A348B5D5_9CREN Uncharacterized protein OS=Sulfodiicoccus acidiphilus OX=1670455 GN=HS1genome_1776 PE=4 SV=1
MM1 pKa = 8.09AMIGGVLFYY10 pKa = 11.31VDD12 pKa = 3.5VVLNAPHH19 pKa = 6.47TVQVHH24 pKa = 5.57TSTVPPPTSGNGQPSSVSVDD44 pKa = 3.44SLVHH48 pKa = 4.64STYY51 pKa = 10.68FLTPEE56 pKa = 4.1ASLSEE61 pKa = 4.17VDD63 pKa = 4.62GLLAVQSSASVQGVVFPVRR82 pKa = 11.84PSGNEE87 pKa = 3.52LTVTLVAYY95 pKa = 10.18VDD97 pKa = 3.92NSTLPIAYY105 pKa = 9.84NPGISLLTGDD115 pKa = 3.81VSAYY119 pKa = 7.94NTLDD123 pKa = 3.35PQGSVWITMWGQGGGANARR142 pKa = 11.84VFVNGNSNPLVQEE155 pKa = 4.23WSAGGGEE162 pKa = 4.21FTFQFVNDD170 pKa = 3.5NGYY173 pKa = 9.96VEE175 pKa = 4.63LAQVVVNGAAYY186 pKa = 10.23SPHH189 pKa = 7.88LDD191 pKa = 3.46TGIPWASVDD200 pKa = 3.52GVGIVADD207 pKa = 3.76NGVLLVQSLVVNGQVLVSS225 pKa = 3.66

Molecular weight: 23.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A348B2P2|A0A348B2P2_9CREN Plasmid stabilization protein OS=Sulfodiicoccus acidiphilus OX=1670455 GN=HS1genome_0833 PE=4 SV=1
MM1 pKa = 8.04DD2 pKa = 5.79LFNSPSRR9 pKa = 11.84KK10 pKa = 9.2LRR12 pKa = 11.84EE13 pKa = 3.61IGVRR17 pKa = 11.84GVAEE21 pKa = 4.38ACALMAAGPGSRR33 pKa = 11.84LLMRR37 pKa = 11.84KK38 pKa = 9.11IPYY41 pKa = 9.0RR42 pKa = 11.84GQMTVAAAAYY52 pKa = 9.2GG53 pKa = 3.54

Molecular weight: 5.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2410

0

2410

625351

39

1376

259.5

28.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.287 ± 0.052

0.617 ± 0.016

4.551 ± 0.046

7.164 ± 0.063

3.997 ± 0.036

7.921 ± 0.043

1.437 ± 0.019

5.036 ± 0.046

5.305 ± 0.043

10.949 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.406 ± 0.023

3.09 ± 0.03

4.556 ± 0.033

2.276 ± 0.029

6.463 ± 0.062

7.084 ± 0.05

5.101 ± 0.049

9.955 ± 0.05

1.19 ± 0.02

3.616 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski