Acetobacter oeni

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3655 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A511XIX5|A0A511XIX5_9PROT Biotin--[acetyl-CoA-carboxylase] ligase OS=Acetobacter oeni OX=304077 GN=AOE01nite_10850 PE=4 SV=1
MM1 pKa = 7.6AFFTGYY7 pKa = 8.93MGLVAGGPASIANEE21 pKa = 4.06VSAGGYY27 pKa = 9.93ARR29 pKa = 11.84LPVSFSSPGDD39 pKa = 3.31GCLTVAASSSYY50 pKa = 10.39IYY52 pKa = 11.18GLATEE57 pKa = 4.54DD58 pKa = 2.98WGLITGIAIYY68 pKa = 10.62SGTTPDD74 pKa = 3.91EE75 pKa = 4.65SPVATWAVRR84 pKa = 11.84PRR86 pKa = 11.84SLSLGQTYY94 pKa = 7.47TVPLAALSLLIEE106 pKa = 4.18PRR108 pKa = 11.84AFFDD112 pKa = 4.44DD113 pKa = 4.38GDD115 pKa = 4.19VLGVTAGGADD125 pKa = 3.93IIAGQPLMFTDD136 pKa = 5.31GVLTPASDD144 pKa = 4.01GSSSSGSLTLAQLSTLVSEE163 pKa = 5.26LMQSLPEE170 pKa = 5.05DD171 pKa = 3.98DD172 pKa = 5.29PGDD175 pKa = 4.02GTSLWVNSGLLAISRR190 pKa = 11.84SSS192 pKa = 2.93

Molecular weight: 19.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A511XQF3|A0A511XQF3_9PROT DNA-binding protein OS=Acetobacter oeni OX=304077 GN=AOE01nite_33890 PE=4 SV=1
MM1 pKa = 7.51IKK3 pKa = 10.48KK4 pKa = 10.19LDD6 pKa = 3.52ARR8 pKa = 11.84GDD10 pKa = 3.63RR11 pKa = 11.84EE12 pKa = 4.03IAPNEE17 pKa = 3.85ANVVRR22 pKa = 11.84RR23 pKa = 11.84IFRR26 pKa = 11.84DD27 pKa = 4.36FAAGIGPRR35 pKa = 11.84AIARR39 pKa = 11.84TLNDD43 pKa = 3.35EE44 pKa = 5.05SIPGPNGKK52 pKa = 9.12LWIDD56 pKa = 3.26TTIRR60 pKa = 11.84GHH62 pKa = 4.69VQRR65 pKa = 11.84GTGIINNEE73 pKa = 4.17LYY75 pKa = 10.7VGRR78 pKa = 11.84LVWNRR83 pKa = 11.84LRR85 pKa = 11.84YY86 pKa = 9.73IKK88 pKa = 10.62DD89 pKa = 3.08PSTGKK94 pKa = 10.14RR95 pKa = 11.84VSRR98 pKa = 11.84LNPEE102 pKa = 4.12SEE104 pKa = 4.23WIITEE109 pKa = 4.12VPEE112 pKa = 4.97LRR114 pKa = 11.84IVDD117 pKa = 3.8DD118 pKa = 4.87ALWQAVRR125 pKa = 11.84EE126 pKa = 4.16RR127 pKa = 11.84QAKK130 pKa = 9.52IAAQYY135 pKa = 10.51VNVISAVRR143 pKa = 11.84ASAANRR149 pKa = 11.84MNGMRR154 pKa = 11.84RR155 pKa = 11.84PKK157 pKa = 10.45SLFSGMVFCGVCGGTYY173 pKa = 9.16SLRR176 pKa = 11.84EE177 pKa = 3.97KK178 pKa = 10.89DD179 pKa = 5.21RR180 pKa = 11.84YY181 pKa = 10.11ACSNRR186 pKa = 11.84IANRR190 pKa = 11.84SCHH193 pKa = 5.57NKK195 pKa = 8.6ATILRR200 pKa = 11.84PPTLRR205 pKa = 11.84SACWPASSTSS215 pKa = 3.16

Molecular weight: 24.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3655

0

3655

1131415

40

3107

309.6

33.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.593 ± 0.052

1.014 ± 0.013

5.606 ± 0.029

5.24 ± 0.038

3.621 ± 0.025

8.553 ± 0.048

2.289 ± 0.018

5.148 ± 0.028

2.876 ± 0.03

10.083 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.467 ± 0.016

2.672 ± 0.03

5.497 ± 0.034

3.133 ± 0.022

7.222 ± 0.047

6.13 ± 0.039

5.976 ± 0.041

7.237 ± 0.035

1.419 ± 0.016

2.225 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski