Gammapapillomavirus 11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALL3|A0A2D2ALL3_9PAPI Regulatory protein E2 OS=Gammapapillomavirus 11 OX=1513256 GN=E2 PE=3 SV=1
MM1 pKa = 7.11MGEE4 pKa = 4.45KK5 pKa = 8.75PTLKK9 pKa = 10.58DD10 pKa = 3.0IVLEE14 pKa = 4.05EE15 pKa = 4.0QLADD19 pKa = 3.3MVMPANLLCEE29 pKa = 4.45EE30 pKa = 4.69SLSPDD35 pKa = 3.34DD36 pKa = 4.0TPEE39 pKa = 4.08EE40 pKa = 4.34EE41 pKa = 4.64SLSPYY46 pKa = 10.36QVDD49 pKa = 4.36SLCKK53 pKa = 9.33ACNKK57 pKa = 9.64RR58 pKa = 11.84VRR60 pKa = 11.84LFVVATAGAIFVLEE74 pKa = 3.74QLLFQNLSIVCPVCSRR90 pKa = 11.84SNLHH94 pKa = 6.74HH95 pKa = 6.39GRR97 pKa = 11.84SS98 pKa = 3.64

Molecular weight: 10.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALL9|A0A2D2ALL9_9PAPI Replication protein E1 OS=Gammapapillomavirus 11 OX=1513256 GN=E1 PE=3 SV=1
MM1 pKa = 6.94NQSDD5 pKa = 3.78LAKK8 pKa = 10.6RR9 pKa = 11.84LDD11 pKa = 3.76ALQVQLMNLYY21 pKa = 10.29EE22 pKa = 4.62KK23 pKa = 11.03GPTDD27 pKa = 3.37LASQIRR33 pKa = 11.84HH34 pKa = 4.87FQLLRR39 pKa = 11.84KK40 pKa = 9.51EE41 pKa = 4.45SVLEE45 pKa = 3.79YY46 pKa = 9.75YY47 pKa = 10.17ARR49 pKa = 11.84KK50 pKa = 9.57EE51 pKa = 4.07GYY53 pKa = 9.42EE54 pKa = 3.8NLGLHH59 pKa = 6.55HH60 pKa = 7.19LPVLKK65 pKa = 10.76VSEE68 pKa = 4.69HH69 pKa = 5.67NAKK72 pKa = 9.86QAIKK76 pKa = 9.55MILYY80 pKa = 10.32LEE82 pKa = 4.48SLNKK86 pKa = 9.7SAYY89 pKa = 9.96ASEE92 pKa = 4.21EE93 pKa = 3.67WTLADD98 pKa = 3.56TSADD102 pKa = 3.53RR103 pKa = 11.84FLSPPKK109 pKa = 10.29NCFKK113 pKa = 10.66KK114 pKa = 10.41GSYY117 pKa = 8.36EE118 pKa = 4.06VEE120 pKa = 3.7VWFDD124 pKa = 3.73NDD126 pKa = 3.4PKK128 pKa = 11.22NAFPYY133 pKa = 10.51INWKK137 pKa = 8.35WIYY140 pKa = 10.11YY141 pKa = 9.34QDD143 pKa = 5.48NNEE146 pKa = 3.94QWHH149 pKa = 5.84KK150 pKa = 11.29VPGKK154 pKa = 8.57TDD156 pKa = 3.36YY157 pKa = 11.16NGLYY161 pKa = 10.01FVEE164 pKa = 4.99HH165 pKa = 7.64DD166 pKa = 3.5GTQTYY171 pKa = 10.37FLLFEE176 pKa = 5.24KK177 pKa = 10.61DD178 pKa = 2.95ANRR181 pKa = 11.84YY182 pKa = 8.43GNSGEE187 pKa = 4.09WTVNLPNEE195 pKa = 4.4QILPPSSTSSSRR207 pKa = 11.84RR208 pKa = 11.84HH209 pKa = 6.02LPDD212 pKa = 3.31SPEE215 pKa = 4.08VNRR218 pKa = 11.84GASTSYY224 pKa = 11.08SPTQEE229 pKa = 4.29EE230 pKa = 3.91IRR232 pKa = 11.84GRR234 pKa = 11.84QVQPPQTSPSTTTRR248 pKa = 11.84SPRR251 pKa = 11.84RR252 pKa = 11.84RR253 pKa = 11.84RR254 pKa = 11.84RR255 pKa = 11.84RR256 pKa = 11.84RR257 pKa = 11.84EE258 pKa = 3.98GEE260 pKa = 3.96SPPTKK265 pKa = 9.67RR266 pKa = 11.84RR267 pKa = 11.84RR268 pKa = 11.84GAQRR272 pKa = 11.84DD273 pKa = 4.06GGSSTISPEE282 pKa = 3.94AVGEE286 pKa = 4.14SHH288 pKa = 6.78QSVRR292 pKa = 11.84ATNLTRR298 pKa = 11.84VEE300 pKa = 4.01RR301 pKa = 11.84LKK303 pKa = 11.3AEE305 pKa = 4.15ARR307 pKa = 11.84DD308 pKa = 3.61PPLIIIRR315 pKa = 11.84GLANNLKK322 pKa = 8.85CWRR325 pKa = 11.84YY326 pKa = 10.01RR327 pKa = 11.84YY328 pKa = 7.49TKK330 pKa = 10.7KK331 pKa = 10.4NVKK334 pKa = 9.96NFIVMSSVFNWITNDD349 pKa = 3.11ANLDD353 pKa = 3.47GGRR356 pKa = 11.84ILVSFASVTQRR367 pKa = 11.84TQFLKK372 pKa = 10.9DD373 pKa = 3.26LTLPPGMSYY382 pKa = 11.23SLGNLEE388 pKa = 4.75KK389 pKa = 10.96LL390 pKa = 3.74

Molecular weight: 44.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2483

98

603

354.7

40.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.518 ± 0.378

2.296 ± 0.799

6.242 ± 0.399

6.122 ± 0.318

4.752 ± 0.521

5.034 ± 0.689

1.973 ± 0.334

5.961 ± 0.884

5.679 ± 0.804

9.344 ± 1.226

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.135 ± 0.457

5.558 ± 0.571

6.122 ± 0.81

4.631 ± 0.528

5.598 ± 0.716

6.726 ± 0.767

5.92 ± 0.555

5.558 ± 0.497

1.248 ± 0.272

3.584 ± 0.422
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski