Pan troglodytes verus polyomavirus 8

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus; Pan troglodytes polyomavirus 8

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6XTZ8|A0A5J6XTZ8_9POLY 139 t antigen OS=Pan troglodytes verus polyomavirus 8 OX=1762023 GN=139T PE=4 SV=1
MM1 pKa = 7.91DD2 pKa = 4.22KK3 pKa = 10.85VLNRR7 pKa = 11.84EE8 pKa = 3.8EE9 pKa = 4.74SMEE12 pKa = 4.42LMDD15 pKa = 5.93LLGLEE20 pKa = 4.16RR21 pKa = 11.84SSWGNLPAMRR31 pKa = 11.84KK32 pKa = 9.65AYY34 pKa = 10.05LKK36 pKa = 10.11KK37 pKa = 10.51CKK39 pKa = 9.6EE40 pKa = 3.81FHH42 pKa = 6.71PDD44 pKa = 3.14KK45 pKa = 11.47GGDD48 pKa = 3.5EE49 pKa = 5.03DD50 pKa = 4.7KK51 pKa = 10.49MKK53 pKa = 10.95RR54 pKa = 11.84MNTLYY59 pKa = 10.81KK60 pKa = 10.68KK61 pKa = 9.75MEE63 pKa = 4.01QDD65 pKa = 3.2VKK67 pKa = 10.58IAHH70 pKa = 5.94QPDD73 pKa = 4.13FGAWNSSEE81 pKa = 3.55IPTYY85 pKa = 9.72GTEE88 pKa = 4.06EE89 pKa = 4.09WEE91 pKa = 4.41SWWNSFNEE99 pKa = 4.07KK100 pKa = 9.17WDD102 pKa = 3.7EE103 pKa = 3.81EE104 pKa = 4.74LFCHH108 pKa = 6.7EE109 pKa = 5.9DD110 pKa = 3.08MFASDD115 pKa = 4.42EE116 pKa = 4.12EE117 pKa = 4.31ATADD121 pKa = 4.05SQHH124 pKa = 5.69STPPKK129 pKa = 9.25KK130 pKa = 9.7KK131 pKa = 8.81RR132 pKa = 11.84KK133 pKa = 9.43RR134 pKa = 11.84RR135 pKa = 11.84GFRR138 pKa = 11.84NN139 pKa = 3.22

Molecular weight: 16.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2VEK6|A0A0S2VEK6_9POLY Minor capsid protein OS=Pan troglodytes verus polyomavirus 8 OX=1762023 GN=VP3 PE=3 SV=1
MM1 pKa = 7.53VLRR4 pKa = 11.84QLSRR8 pKa = 11.84QASVKK13 pKa = 10.28VGKK16 pKa = 7.95TWTGTKK22 pKa = 9.71RR23 pKa = 11.84RR24 pKa = 11.84AQRR27 pKa = 11.84IFIFILEE34 pKa = 4.21ILLEE38 pKa = 4.16FCRR41 pKa = 11.84GEE43 pKa = 4.01DD44 pKa = 4.57SVDD47 pKa = 3.15GKK49 pKa = 9.62QKK51 pKa = 10.36KK52 pKa = 9.41RR53 pKa = 11.84EE54 pKa = 3.99STLTDD59 pKa = 3.02KK60 pKa = 10.82TGYY63 pKa = 10.17

Molecular weight: 7.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2018

63

691

288.3

32.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.095 ± 1.138

1.982 ± 0.665

5.699 ± 0.546

7.235 ± 0.579

4.46 ± 0.526

5.897 ± 0.636

2.478 ± 0.349

4.708 ± 0.615

7.334 ± 1.211

8.622 ± 0.642

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.825 ± 0.523

4.212 ± 0.379

5.104 ± 0.579

4.163 ± 0.437

5.401 ± 0.682

7.235 ± 0.662

5.798 ± 0.721

5.401 ± 0.679

1.833 ± 0.397

3.518 ± 0.224
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski