Sulfitobacter sp. JL08

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter; unclassified Sulfitobacter

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4063 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345RBX5|A0A345RBX5_9RHOB ABC transporter permease OS=Sulfitobacter sp. JL08 OX=2070369 GN=C1J05_11680 PE=3 SV=1
MM1 pKa = 7.55AAILTVAFAAPTTAQVATDD20 pKa = 4.27CPNPDD25 pKa = 4.92LYY27 pKa = 11.57SGDD30 pKa = 3.76YY31 pKa = 10.83FLTCNEE37 pKa = 3.94FQGSVKK43 pKa = 9.49EE44 pKa = 4.32TTQAEE49 pKa = 4.26NVTYY53 pKa = 10.99LEE55 pKa = 4.43GTDD58 pKa = 4.04TITGLDD64 pKa = 3.36NSQPGFTISNSYY76 pKa = 10.27FLYY79 pKa = 10.85DD80 pKa = 3.36LTEE83 pKa = 4.54FGGSLIDD90 pKa = 3.52EE91 pKa = 4.53NLNIEE96 pKa = 4.26VTFFATGMLDD106 pKa = 3.09SSTGGPSAYY115 pKa = 9.75EE116 pKa = 3.68DD117 pKa = 3.45LAFYY121 pKa = 10.84DD122 pKa = 3.94VTQASIDD129 pKa = 3.88FLLGASSTTTLTQVFSDD146 pKa = 4.86LEE148 pKa = 4.31TMGAGGSSFGTKK160 pKa = 10.06RR161 pKa = 11.84INDD164 pKa = 3.43SDD166 pKa = 4.12LQGEE170 pKa = 5.02AIPTFSIVLSDD181 pKa = 4.86AALTDD186 pKa = 4.02LNLAIGNPEE195 pKa = 3.99LDD197 pKa = 3.41YY198 pKa = 10.96WGLGAHH204 pKa = 6.17LTSTNGRR211 pKa = 11.84SVQISSLSITDD222 pKa = 3.73APTSGLRR229 pKa = 11.84AVPEE233 pKa = 4.26VSATGALAAFGSLLAMMAFLWEE255 pKa = 4.14RR256 pKa = 11.84RR257 pKa = 11.84RR258 pKa = 11.84VTAAAVV264 pKa = 3.12

Molecular weight: 27.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345R7K1|A0A345R7K1_9RHOB TVP38/TMEM64 family membrane protein OS=Sulfitobacter sp. JL08 OX=2070369 GN=C1J05_02590 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.27SGRR28 pKa = 11.84QILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4063

0

4063

1260259

40

2132

310.2

33.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.699 ± 0.046

0.957 ± 0.013

6.305 ± 0.03

5.468 ± 0.033

3.888 ± 0.025

8.364 ± 0.036

2.11 ± 0.019

5.451 ± 0.027

3.478 ± 0.03

9.804 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.856 ± 0.02

2.886 ± 0.019

4.943 ± 0.026

3.415 ± 0.021

6.309 ± 0.033

5.422 ± 0.026

5.581 ± 0.024

7.262 ± 0.032

1.422 ± 0.016

2.382 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski