Neorhizobium sp. SOG26

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium; unclassified Neorhizobium

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4290 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346YJY4|A0A346YJY4_9RHIZ Heme lyase NrfEFG subunit NrfE OS=Neorhizobium sp. SOG26 OX=2060726 GN=CYG48_03130 PE=3 SV=1
MM1 pKa = 7.39KK2 pKa = 10.3AILILASAAAMTASSAVYY20 pKa = 9.91AADD23 pKa = 3.27AVEE26 pKa = 5.0TIPAAPEE33 pKa = 4.32AIEE36 pKa = 4.25TVSAFTWSGPYY47 pKa = 9.52IGLHH51 pKa = 6.27GGYY54 pKa = 10.3AWGNADD60 pKa = 3.58STLLPGGSDD69 pKa = 3.51DD70 pKa = 4.31FDD72 pKa = 4.2GGRR75 pKa = 11.84FGAFVGYY82 pKa = 9.84NWQFSNGFVAGIEE95 pKa = 4.11GDD97 pKa = 4.35VNYY100 pKa = 10.74DD101 pKa = 3.13WNEE104 pKa = 3.51NTYY107 pKa = 11.11AGVDD111 pKa = 3.55AEE113 pKa = 4.79SGFSGSVRR121 pKa = 11.84GRR123 pKa = 11.84VGYY126 pKa = 10.86AFDD129 pKa = 4.09RR130 pKa = 11.84ALLFAAGGWTATNVNVDD147 pKa = 3.36GGGVDD152 pKa = 5.83DD153 pKa = 6.94DD154 pKa = 4.61DD155 pKa = 4.73TLHH158 pKa = 6.42GWTIGGGLDD167 pKa = 3.56YY168 pKa = 11.38AFTDD172 pKa = 3.51NVFGRR177 pKa = 11.84VEE179 pKa = 3.57YY180 pKa = 10.15RR181 pKa = 11.84YY182 pKa = 10.56NDD184 pKa = 3.67FGSGDD189 pKa = 3.36IAGTDD194 pKa = 3.06VDD196 pKa = 4.83FDD198 pKa = 3.61QHH200 pKa = 5.44VVNVGIAVKK209 pKa = 10.16FF210 pKa = 3.63

Molecular weight: 21.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346YJ05|A0A346YJ05_9RHIZ Two-component system response regulator OS=Neorhizobium sp. SOG26 OX=2060726 GN=CYG48_01190 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATNGGRR28 pKa = 11.84KK29 pKa = 8.93VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4290

0

4290

1337437

34

2831

311.8

33.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.685 ± 0.049

0.781 ± 0.011

5.563 ± 0.026

6.036 ± 0.034

3.897 ± 0.028

8.213 ± 0.03

1.995 ± 0.017

5.613 ± 0.027

3.851 ± 0.031

9.94 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.68 ± 0.016

2.873 ± 0.017

4.954 ± 0.025

3.228 ± 0.02

6.604 ± 0.033

5.741 ± 0.025

5.308 ± 0.02

7.444 ± 0.03

1.273 ± 0.015

2.323 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski