Geodermatophilus sp. DSM 44513

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Geodermatophilus; unclassified Geodermatophilus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4421 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5S4ZHC8|A0A5S4ZHC8_9ACTN Osmoprotectant transport system permease protein OS=Geodermatophilus sp. DSM 44513 OX=1528104 GN=JD83_02292 PE=3 SV=1
MM1 pKa = 6.91TRR3 pKa = 11.84SSRR6 pKa = 11.84RR7 pKa = 11.84LTRR10 pKa = 11.84LIATATAVSALAACGGSDD28 pKa = 3.62GGGAGGGGGEE38 pKa = 4.62NEE40 pKa = 4.53ASDD43 pKa = 3.69TGITADD49 pKa = 4.02AIKK52 pKa = 10.41IGAHH56 pKa = 5.39YY57 pKa = 9.82PLTGVAAPGYY67 pKa = 9.3SEE69 pKa = 4.89IPTGVDD75 pKa = 3.32CYY77 pKa = 11.4FDD79 pKa = 3.69FVNAAGGVNGRR90 pKa = 11.84QIDD93 pKa = 3.82YY94 pKa = 10.62VYY96 pKa = 10.95RR97 pKa = 11.84DD98 pKa = 3.69DD99 pKa = 6.02AYY101 pKa = 11.7NPTNTSAVVNEE112 pKa = 4.79LVLQDD117 pKa = 3.99EE118 pKa = 5.2VFMLMGGLGTPTHH131 pKa = 6.06SAVLDD136 pKa = 3.71FLNGEE141 pKa = 4.31GVPDD145 pKa = 4.14LFVASGSLLWDD156 pKa = 3.56NPEE159 pKa = 3.96EE160 pKa = 4.09NPYY163 pKa = 9.44TFGWQPDD170 pKa = 3.75YY171 pKa = 11.01EE172 pKa = 4.39IEE174 pKa = 4.21GKK176 pKa = 10.95VIGQYY181 pKa = 9.67IAEE184 pKa = 4.65NFPEE188 pKa = 4.05ARR190 pKa = 11.84VGLFLQDD197 pKa = 4.18DD198 pKa = 4.27DD199 pKa = 4.79FGEE202 pKa = 4.55DD203 pKa = 3.12GEE205 pKa = 4.67AGVRR209 pKa = 11.84QFIDD213 pKa = 3.6DD214 pKa = 3.89QIVAAEE220 pKa = 4.33RR221 pKa = 11.84YY222 pKa = 9.4VPGNTDD228 pKa = 3.09VGPQLAALQAAGADD242 pKa = 3.51FVVGFNVPSYY252 pKa = 9.64TALSQLTALRR262 pKa = 11.84LGYY265 pKa = 10.24DD266 pKa = 3.55PQWFYY271 pKa = 11.99SNVGSDD277 pKa = 3.53PALVGSLLANFSQGQVSDD295 pKa = 4.04ASLLDD300 pKa = 3.82GALTTEE306 pKa = 4.29YY307 pKa = 10.58LAGVDD312 pKa = 4.0TPDD315 pKa = 5.09DD316 pKa = 3.57PWVQLWQRR324 pKa = 11.84VWDD327 pKa = 3.79EE328 pKa = 4.44CEE330 pKa = 3.93SAEE333 pKa = 5.35GEE335 pKa = 4.13LTNYY339 pKa = 9.37RR340 pKa = 11.84VYY342 pKa = 11.49GMAQAYY348 pKa = 6.17TTIQALQAAGQNPTRR363 pKa = 11.84DD364 pKa = 3.65GLVEE368 pKa = 3.99AVEE371 pKa = 3.91QAGAEE376 pKa = 4.17FEE378 pKa = 4.6GPALAPYY385 pKa = 9.66RR386 pKa = 11.84YY387 pKa = 9.47SAEE390 pKa = 3.64RR391 pKa = 11.84HH392 pKa = 5.55AGVGGVKK399 pKa = 9.77IARR402 pKa = 11.84ITGTSAEE409 pKa = 4.58DD410 pKa = 3.38LTPVLVTDD418 pKa = 4.32NGDD421 pKa = 3.48AAIEE425 pKa = 4.05EE426 pKa = 4.49SDD428 pKa = 4.82AEE430 pKa = 4.31PTTPPEE436 pKa = 3.95SGIPDD441 pKa = 3.72VQPVGG446 pKa = 3.4

Molecular weight: 46.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5S4ZIL3|A0A5S4ZIL3_9ACTN Uncharacterized protein OS=Geodermatophilus sp. DSM 44513 OX=1528104 GN=JD83_02963 PE=4 SV=1
MM1 pKa = 7.35GPAGRR6 pKa = 11.84GRR8 pKa = 11.84SAGRR12 pKa = 11.84AAGDD16 pKa = 3.32RR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84GARR22 pKa = 11.84AAGRR26 pKa = 11.84GPAARR31 pKa = 11.84PGRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84HH37 pKa = 5.52HH38 pKa = 5.99GRR40 pKa = 11.84RR41 pKa = 11.84PGARR45 pKa = 11.84RR46 pKa = 11.84GLPPRR51 pKa = 11.84RR52 pKa = 11.84AGPPDD57 pKa = 3.02GRR59 pKa = 11.84LRR61 pKa = 11.84GQRR64 pKa = 11.84GDD66 pKa = 3.35PAGRR70 pKa = 11.84RR71 pKa = 11.84PRR73 pKa = 11.84AAAPPGGRR81 pKa = 11.84PAGAGAGRR89 pKa = 11.84GRR91 pKa = 11.84GAGRR95 pKa = 11.84LRR97 pKa = 11.84GAGPAHH103 pKa = 6.76RR104 pKa = 11.84QRR106 pKa = 11.84GAGGGHH112 pKa = 6.42GCGHH116 pKa = 7.42AAGTGHH122 pKa = 6.99RR123 pKa = 11.84PVAGRR128 pKa = 11.84GAGPGRR134 pKa = 11.84GRR136 pKa = 11.84GRR138 pKa = 11.84PAARR142 pKa = 11.84RR143 pKa = 11.84PAPGARR149 pKa = 11.84RR150 pKa = 11.84RR151 pKa = 11.84LRR153 pKa = 11.84ALRR156 pKa = 11.84RR157 pKa = 11.84RR158 pKa = 11.84HH159 pKa = 5.38RR160 pKa = 11.84RR161 pKa = 11.84HH162 pKa = 5.77RR163 pKa = 11.84AAGAGLVPAAASPRR177 pKa = 11.84LAAAAGRR184 pKa = 11.84CRR186 pKa = 11.84RR187 pKa = 11.84RR188 pKa = 11.84RR189 pKa = 11.84RR190 pKa = 11.84GRR192 pKa = 11.84RR193 pKa = 11.84PGHH196 pKa = 4.57RR197 pKa = 11.84TARR200 pKa = 11.84RR201 pKa = 11.84RR202 pKa = 11.84ALRR205 pKa = 11.84AGQPGVAAGEE215 pKa = 3.95PAGRR219 pKa = 11.84ARR221 pKa = 11.84RR222 pKa = 11.84GAGHH226 pKa = 6.94RR227 pKa = 11.84AGAARR232 pKa = 11.84HH233 pKa = 5.86AGRR236 pKa = 11.84AGGTPAGPGPGVAGRR251 pKa = 11.84LAGALAGRR259 pKa = 11.84GGAGRR264 pKa = 11.84GRR266 pKa = 11.84AARR269 pKa = 11.84RR270 pKa = 11.84GHH272 pKa = 6.35RR273 pKa = 11.84LAGRR277 pKa = 11.84GPRR280 pKa = 11.84RR281 pKa = 11.84GAADD285 pKa = 3.59RR286 pKa = 11.84AGRR289 pKa = 11.84GGRR292 pKa = 11.84LAALAVPPRR301 pKa = 11.84PAAGGGRR308 pKa = 11.84PGRR311 pKa = 11.84RR312 pKa = 11.84RR313 pKa = 11.84GARR316 pKa = 11.84LAAAAGDD323 pKa = 4.0AGLAAAGHH331 pKa = 6.08RR332 pKa = 11.84GGRR335 pKa = 11.84LRR337 pKa = 11.84RR338 pKa = 11.84RR339 pKa = 11.84AGGRR343 pKa = 11.84AGPADD348 pKa = 3.76GAGGGAAGGRR358 pKa = 11.84RR359 pKa = 11.84PGGRR363 pKa = 11.84PGRR366 pKa = 11.84PLPGPAGHH374 pKa = 6.64RR375 pKa = 11.84HH376 pKa = 5.21AAAGAAHH383 pKa = 7.14PPRR386 pKa = 11.84RR387 pKa = 11.84RR388 pKa = 11.84SRR390 pKa = 11.84RR391 pKa = 11.84RR392 pKa = 11.84PGRR395 pKa = 11.84GAVRR399 pKa = 11.84PGRR402 pKa = 11.84RR403 pKa = 11.84GGRR406 pKa = 11.84HH407 pKa = 4.7RR408 pKa = 11.84HH409 pKa = 5.37PLPGRR414 pKa = 11.84GPARR418 pKa = 11.84PAGGRR423 pKa = 11.84GPPGRR428 pKa = 11.84GAAGRR433 pKa = 11.84ARR435 pKa = 11.84AGGAPDD441 pKa = 3.5RR442 pKa = 11.84GQRR445 pKa = 11.84DD446 pKa = 3.34GRR448 pKa = 11.84GARR451 pKa = 11.84PGPGDD456 pKa = 3.23RR457 pKa = 11.84HH458 pKa = 5.35GRR460 pKa = 11.84AAGQRR465 pKa = 11.84PVAGRR470 pKa = 11.84PRR472 pKa = 11.84HH473 pKa = 5.08PARR476 pKa = 11.84RR477 pKa = 11.84PGAVDD482 pKa = 3.35RR483 pKa = 4.97

Molecular weight: 48.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4421

0

4421

1365029

40

2842

308.8

32.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.864 ± 0.063

0.704 ± 0.01

6.169 ± 0.028

5.296 ± 0.031

2.399 ± 0.021

9.951 ± 0.032

2.052 ± 0.015

2.278 ± 0.025

1.099 ± 0.02

10.843 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.465 ± 0.014

1.277 ± 0.016

6.46 ± 0.031

2.638 ± 0.021

8.531 ± 0.039

4.51 ± 0.025

6.077 ± 0.029

10.247 ± 0.036

1.461 ± 0.016

1.678 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski