Genomoviridae sp.

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345N0J8|A0A345N0J8_9VIRU Rep catalytic domain protein OS=Genomoviridae sp. OX=2202565 PE=3 SV=1
MM1 pKa = 7.4TFDD4 pKa = 3.03FHH6 pKa = 7.8CRR8 pKa = 11.84YY9 pKa = 10.74GLFTYY14 pKa = 7.66SQCTGLDD21 pKa = 3.23PWHH24 pKa = 6.51VLDD27 pKa = 4.79KK28 pKa = 10.79FSEE31 pKa = 4.04IGAEE35 pKa = 4.04CIIARR40 pKa = 11.84EE41 pKa = 4.04AHH43 pKa = 6.55ADD45 pKa = 3.58GGTHH49 pKa = 6.19LHH51 pKa = 6.59VFADD55 pKa = 3.35WGRR58 pKa = 11.84RR59 pKa = 11.84KK60 pKa = 10.07RR61 pKa = 11.84FRR63 pKa = 11.84RR64 pKa = 11.84HH65 pKa = 6.15DD66 pKa = 3.67FADD69 pKa = 3.18VDD71 pKa = 4.21SFHH74 pKa = 7.12PNIVPSRR81 pKa = 11.84GTPHH85 pKa = 7.33LGWDD89 pKa = 3.69YY90 pKa = 10.71ATKK93 pKa = 10.79DD94 pKa = 3.25GDD96 pKa = 3.7IVAGGLEE103 pKa = 4.28RR104 pKa = 11.84PGGSCDD110 pKa = 3.06NLLRR114 pKa = 11.84KK115 pKa = 9.79DD116 pKa = 4.48HH117 pKa = 6.64IWNQIMDD124 pKa = 3.94AVTRR128 pKa = 11.84EE129 pKa = 3.85QFFEE133 pKa = 4.3LVRR136 pKa = 11.84EE137 pKa = 4.3LAPADD142 pKa = 3.69LAKK145 pKa = 10.71SFPSLSKK152 pKa = 10.52YY153 pKa = 10.8ADD155 pKa = 2.85WRR157 pKa = 11.84YY158 pKa = 10.63AEE160 pKa = 4.47PLATYY165 pKa = 8.2EE166 pKa = 4.51GPTFGDD172 pKa = 2.86IRR174 pKa = 11.84FDD176 pKa = 3.86LSPYY180 pKa = 9.73PGLEE184 pKa = 3.55QWCNDD189 pKa = 2.31IRR191 pKa = 11.84AGSNGQSGTYY201 pKa = 9.83

Molecular weight: 22.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345N0J7|A0A345N0J7_9VIRU Uncharacterized protein OS=Genomoviridae sp. OX=2202565 PE=4 SV=1
MM1 pKa = 6.37ATKK4 pKa = 10.45RR5 pKa = 11.84IIRR8 pKa = 11.84PRR10 pKa = 11.84RR11 pKa = 11.84GNRR14 pKa = 11.84RR15 pKa = 11.84FVKK18 pKa = 10.43RR19 pKa = 11.84KK20 pKa = 8.89ARR22 pKa = 11.84PAARR26 pKa = 11.84SRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84PMKK33 pKa = 9.92RR34 pKa = 11.84GSMSRR39 pKa = 11.84KK40 pKa = 9.05RR41 pKa = 11.84ILNITSRR48 pKa = 11.84KK49 pKa = 8.82KK50 pKa = 9.49QDD52 pKa = 4.09NMRR55 pKa = 11.84SWNGTPFLAGSAGPIVMQGDD75 pKa = 4.0DD76 pKa = 3.51SYY78 pKa = 11.72MFGFVCTARR87 pKa = 11.84DD88 pKa = 3.52KK89 pKa = 11.58DD90 pKa = 4.33LGTGPAPIEE99 pKa = 4.01MDD101 pKa = 3.61PSRR104 pKa = 11.84TSTHH108 pKa = 6.39CYY110 pKa = 8.37MRR112 pKa = 11.84GFKK115 pKa = 10.29EE116 pKa = 4.69RR117 pKa = 11.84IDD119 pKa = 4.22LFTGSAHH126 pKa = 5.37PWIWRR131 pKa = 11.84RR132 pKa = 11.84ILFTYY137 pKa = 10.06KK138 pKa = 10.69GLDD141 pKa = 3.63LLRR144 pKa = 11.84VTDD147 pKa = 4.87DD148 pKa = 4.15EE149 pKa = 5.12SPGDD153 pKa = 4.04DD154 pKa = 3.68GVGQLWVEE162 pKa = 4.11SSDD165 pKa = 3.81GYY167 pKa = 10.74GRR169 pKa = 11.84YY170 pKa = 8.74YY171 pKa = 11.4ANIGDD176 pKa = 4.01PTDD179 pKa = 4.04LKK181 pKa = 11.25SSVIGQHH188 pKa = 5.84IRR190 pKa = 11.84DD191 pKa = 4.7LIFKK195 pKa = 8.17GTAEE199 pKa = 4.19KK200 pKa = 10.52DD201 pKa = 3.61YY202 pKa = 10.85TSSFSAKK209 pKa = 9.1TDD211 pKa = 3.36QEE213 pKa = 4.33RR214 pKa = 11.84VKK216 pKa = 10.47ILYY219 pKa = 9.93DD220 pKa = 3.12KK221 pKa = 10.79TVTIKK226 pKa = 10.55SGNDD230 pKa = 2.48RR231 pKa = 11.84GVIKK235 pKa = 9.44TYY237 pKa = 10.62RR238 pKa = 11.84RR239 pKa = 11.84WHH241 pKa = 5.65GFNRR245 pKa = 11.84TLIYY249 pKa = 11.03DD250 pKa = 3.75EE251 pKa = 5.68DD252 pKa = 4.0EE253 pKa = 4.62VGAQTANRR261 pKa = 11.84LLSSQSPRR269 pKa = 11.84SMGDD273 pKa = 3.0VYY275 pKa = 11.43VIDD278 pKa = 4.77FFSPGLGGTSDD289 pKa = 3.97DD290 pKa = 4.35EE291 pKa = 4.97LRR293 pKa = 11.84LLPTATLYY301 pKa = 8.93WHH303 pKa = 6.59EE304 pKa = 4.22RR305 pKa = 3.47

Molecular weight: 34.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

738

201

305

246.0

27.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.504 ± 0.728

1.355 ± 0.381

7.317 ± 1.395

4.065 ± 0.371

4.472 ± 0.655

8.537 ± 0.663

3.252 ± 0.744

5.556 ± 0.347

3.659 ± 1.155

9.485 ± 2.282

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.252 ± 1.018

2.71 ± 0.126

4.336 ± 0.556

3.117 ± 0.66

8.13 ± 1.788

9.485 ± 2.142

6.098 ± 0.515

3.794 ± 0.219

2.168 ± 0.271

2.71 ± 1.096
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski