Cupriavidus plantarum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5711 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A316F5L5|A0A316F5L5_9BURK N-acetyl-gamma-glutamyl-phosphate reductase OS=Cupriavidus plantarum OX=942865 GN=argC PE=3 SV=1
MM1 pKa = 6.8NTVEE5 pKa = 5.29IPIPDD10 pKa = 4.46PEE12 pKa = 5.2DD13 pKa = 3.91EE14 pKa = 4.98PDD16 pKa = 3.15LRR18 pKa = 11.84SYY20 pKa = 11.06INQFITDD27 pKa = 4.84EE28 pKa = 4.2IGSLYY33 pKa = 10.89GEE35 pKa = 4.88LVPALDD41 pKa = 4.67LDD43 pKa = 4.21VGDD46 pKa = 4.65EE47 pKa = 4.14RR48 pKa = 11.84ATIDD52 pKa = 4.91DD53 pKa = 4.06IEE55 pKa = 5.2VDD57 pKa = 3.78DD58 pKa = 5.36VEE60 pKa = 4.45VHH62 pKa = 5.92GDD64 pKa = 3.7KK65 pKa = 10.66IIVYY69 pKa = 7.43YY70 pKa = 9.16TIQYY74 pKa = 8.36SAHH77 pKa = 6.14YY78 pKa = 8.94GCSDD82 pKa = 2.87IDD84 pKa = 3.78YY85 pKa = 11.27AEE87 pKa = 4.98DD88 pKa = 3.61DD89 pKa = 3.49QRR91 pKa = 11.84KK92 pKa = 7.07ITGVRR97 pKa = 11.84DD98 pKa = 3.42GEE100 pKa = 4.0NWVFDD105 pKa = 3.83WYY107 pKa = 11.21VSPEE111 pKa = 3.49RR112 pKa = 11.84LAPNEE117 pKa = 3.96EE118 pKa = 4.29LL119 pKa = 4.43

Molecular weight: 13.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A316ES26|A0A316ES26_9BURK LysR family transcriptional regulator OS=Cupriavidus plantarum OX=942865 GN=C7419_103658 PE=3 SV=1
MM1 pKa = 7.32RR2 pKa = 11.84RR3 pKa = 11.84ARR5 pKa = 11.84RR6 pKa = 11.84SRR8 pKa = 11.84TTDD11 pKa = 2.46ACIRR15 pKa = 11.84RR16 pKa = 11.84CRR18 pKa = 11.84RR19 pKa = 11.84IPHH22 pKa = 6.67LSAPGGIRR30 pKa = 11.84RR31 pKa = 11.84CLPRR35 pKa = 11.84CGEE38 pKa = 3.99TSGRR42 pKa = 11.84QARR45 pKa = 11.84RR46 pKa = 11.84ARR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84CRR52 pKa = 11.84HH53 pKa = 4.73HH54 pKa = 6.53RR55 pKa = 11.84HH56 pKa = 4.91RR57 pKa = 11.84HH58 pKa = 3.92RR59 pKa = 11.84HH60 pKa = 4.17RR61 pKa = 11.84HH62 pKa = 5.1RR63 pKa = 11.84QLQLQLQLQPQGRR76 pKa = 11.84ARR78 pKa = 11.84ALRR81 pKa = 11.84PPPRR85 pKa = 11.84PRR87 pKa = 11.84VPVLLRR93 pKa = 11.84GRR95 pKa = 11.84AGRR98 pKa = 11.84RR99 pKa = 11.84TRR101 pKa = 11.84RR102 pKa = 11.84RR103 pKa = 11.84ARR105 pKa = 11.84VSPTTAATIATNGGHH120 pKa = 7.17RR121 pKa = 11.84ATIPRR126 pKa = 11.84SPGRR130 pKa = 11.84GASGKK135 pKa = 8.94ISGRR139 pKa = 11.84ARR141 pKa = 11.84EE142 pKa = 3.92HH143 pKa = 6.12RR144 pKa = 11.84RR145 pKa = 11.84RR146 pKa = 11.84ARR148 pKa = 11.84RR149 pKa = 11.84PRR151 pKa = 11.84HH152 pKa = 4.91RR153 pKa = 11.84LRR155 pKa = 11.84RR156 pKa = 11.84RR157 pKa = 11.84PHH159 pKa = 6.21RR160 pKa = 11.84RR161 pKa = 11.84LHH163 pKa = 4.75QLRR166 pKa = 11.84HH167 pKa = 5.72RR168 pKa = 11.84RR169 pKa = 11.84LHH171 pKa = 4.63QLRR174 pKa = 11.84LRR176 pKa = 11.84LRR178 pKa = 11.84LRR180 pKa = 11.84LRR182 pKa = 11.84LRR184 pKa = 11.84RR185 pKa = 11.84LHH187 pKa = 5.18QRR189 pKa = 11.84QRR191 pKa = 11.84QRR193 pKa = 11.84QRR195 pKa = 11.84QHH197 pKa = 4.96QRR199 pKa = 11.84QHH201 pKa = 4.49QRR203 pKa = 11.84QHH205 pKa = 4.57QRR207 pKa = 11.84RR208 pKa = 11.84HH209 pKa = 4.37RR210 pKa = 11.84HH211 pKa = 4.01RR212 pKa = 11.84HH213 pKa = 3.78RR214 pKa = 11.84HH215 pKa = 4.13RR216 pKa = 11.84HH217 pKa = 4.13RR218 pKa = 11.84HH219 pKa = 4.13RR220 pKa = 11.84HH221 pKa = 4.13RR222 pKa = 11.84HH223 pKa = 4.13RR224 pKa = 11.84HH225 pKa = 4.13RR226 pKa = 11.84HH227 pKa = 4.35RR228 pKa = 11.84HH229 pKa = 3.69RR230 pKa = 11.84HH231 pKa = 4.68RR232 pKa = 11.84PPRR235 pKa = 11.84RR236 pKa = 11.84TSRR239 pKa = 11.84RR240 pKa = 11.84SRR242 pKa = 11.84TSPSPPAIPPHH253 pKa = 6.33RR254 pKa = 11.84SSPNTRR260 pKa = 11.84RR261 pKa = 11.84RR262 pKa = 11.84WW263 pKa = 3.31

Molecular weight: 32.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5711

0

5711

1919394

27

3701

336.1

36.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.171 ± 0.047

0.852 ± 0.01

5.503 ± 0.031

5.063 ± 0.03

3.429 ± 0.02

8.453 ± 0.039

2.246 ± 0.019

4.583 ± 0.021

2.828 ± 0.028

10.157 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.531 ± 0.015

2.653 ± 0.022

5.378 ± 0.023

3.567 ± 0.024

7.301 ± 0.033

5.304 ± 0.023

5.548 ± 0.034

7.759 ± 0.027

1.335 ± 0.012

2.34 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski