Streptomyces albireticuli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6966 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z2L9M1|A0A1Z2L9M1_9ACTN Short-chain dehydrogenase OS=Streptomyces albireticuli OX=1940 GN=SMD11_5407 PE=4 SV=1
MM1 pKa = 7.15TVQEE5 pKa = 4.61EE6 pKa = 4.81GLGDD10 pKa = 3.8LEE12 pKa = 4.33VWIDD16 pKa = 3.5QDD18 pKa = 3.99LCTGDD23 pKa = 5.01GICAQYY29 pKa = 10.9APEE32 pKa = 4.23VFEE35 pKa = 5.9LDD37 pKa = 3.05IDD39 pKa = 3.63GLAYY43 pKa = 10.48VKK45 pKa = 11.02SPDD48 pKa = 4.45DD49 pKa = 4.02EE50 pKa = 4.91LLQEE54 pKa = 4.36QGATTPVPLPLLADD68 pKa = 3.52VRR70 pKa = 11.84EE71 pKa = 4.29SAKK74 pKa = 10.67DD75 pKa = 3.61CPGDD79 pKa = 4.14CIHH82 pKa = 6.4VRR84 pKa = 11.84RR85 pKa = 11.84VSDD88 pKa = 3.27KK89 pKa = 10.85VEE91 pKa = 4.17VYY93 pKa = 10.9GPDD96 pKa = 3.36AEE98 pKa = 4.31

Molecular weight: 10.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z2L475|A0A1Z2L475_9ACTN Non-specific serine/threonine protein kinase OS=Streptomyces albireticuli OX=1940 GN=SMD11_3451 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILASRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.36GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6966

0

6966

2327136

26

9512

334.1

35.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.186 ± 0.054

0.825 ± 0.008

5.837 ± 0.021

5.706 ± 0.031

2.721 ± 0.015

9.902 ± 0.031

2.326 ± 0.015

2.81 ± 0.022

2.084 ± 0.029

10.397 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.708 ± 0.012

1.589 ± 0.015

6.393 ± 0.033

2.449 ± 0.017

8.414 ± 0.036

4.777 ± 0.022

6.007 ± 0.022

8.41 ± 0.027

1.482 ± 0.013

1.978 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski