Marinobacter sp. BSs20148

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter; unclassified Marinobacter

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3885 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M1FC69|M1FC69_9ALTE Proline iminopeptidase OS=Marinobacter sp. BSs20148 OX=490759 GN=pip PE=3 SV=1
MM1 pKa = 7.45SVVQQQVSAPLFFSNSAAAKK21 pKa = 9.59AKK23 pKa = 10.27EE24 pKa = 4.29LIDD27 pKa = 3.73EE28 pKa = 4.84EE29 pKa = 4.94GNADD33 pKa = 3.72LKK35 pKa = 11.22LRR37 pKa = 11.84VYY39 pKa = 9.06VTGGGCSGFQYY50 pKa = 10.84GFSFDD55 pKa = 4.68DD56 pKa = 4.18AQDD59 pKa = 4.24DD60 pKa = 3.85EE61 pKa = 4.54DD62 pKa = 4.74TIIEE66 pKa = 4.06RR67 pKa = 11.84DD68 pKa = 3.83GVKK71 pKa = 10.65LLVDD75 pKa = 3.8PMSYY79 pKa = 10.37QYY81 pKa = 11.59LVGSTVDD88 pKa = 3.55YY89 pKa = 11.59LEE91 pKa = 4.76GLQGSQFVVNNPNASSTCGCGSSFSII117 pKa = 5.02

Molecular weight: 12.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M1FMA5|M1FMA5_9ALTE Uncharacterized protein OS=Marinobacter sp. BSs20148 OX=490759 GN=MRBBS_3512 PE=4 SV=1
MM1 pKa = 7.66RR2 pKa = 11.84PVPISIAVVVMLVSLSGAAKK22 pKa = 9.74ADD24 pKa = 3.68YY25 pKa = 10.48YY26 pKa = 11.17RR27 pKa = 11.84WTDD30 pKa = 3.28ANGVTHH36 pKa = 6.82FTDD39 pKa = 3.41KK40 pKa = 10.88PKK42 pKa = 10.62TPGSQAINFHH52 pKa = 6.07QPTVIPIADD61 pKa = 3.51NNRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84GDD68 pKa = 3.56RR69 pKa = 11.84LQGLQPDD76 pKa = 4.16TPKK79 pKa = 11.08NSVQGKK85 pKa = 6.93AQKK88 pKa = 9.48PAQANAAEE96 pKa = 4.41IAQQKK101 pKa = 7.36TCEE104 pKa = 4.05NYY106 pKa = 10.48ADD108 pKa = 4.71RR109 pKa = 11.84IGNIEE114 pKa = 3.76SRR116 pKa = 11.84LRR118 pKa = 11.84AGGYY122 pKa = 8.5SASRR126 pKa = 11.84GNRR129 pKa = 11.84LRR131 pKa = 11.84RR132 pKa = 11.84DD133 pKa = 3.42RR134 pKa = 11.84RR135 pKa = 11.84EE136 pKa = 3.94LASKK140 pKa = 8.75RR141 pKa = 11.84TWEE144 pKa = 4.07CLRR147 pKa = 11.84RR148 pKa = 3.76

Molecular weight: 16.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3885

0

3885

1180275

37

5235

303.8

33.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.21 ± 0.046

0.99 ± 0.014

5.497 ± 0.036

5.861 ± 0.041

3.851 ± 0.03

7.788 ± 0.041

2.208 ± 0.02

5.526 ± 0.031

3.807 ± 0.037

10.818 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.697 ± 0.018

3.516 ± 0.028

4.55 ± 0.026

4.266 ± 0.032

6.005 ± 0.033

6.068 ± 0.029

5.185 ± 0.028

7.298 ± 0.031

1.339 ± 0.017

2.521 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski