Oceanimonas doudoroffii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3522 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A233RHX6|A0A233RHX6_9GAMM DAO domain-containing protein OS=Oceanimonas doudoroffii OX=84158 GN=B6S08_05710 PE=4 SV=1
MM1 pKa = 7.68KK2 pKa = 9.38KK3 pKa = 9.08TILALTIPALFATSASAVTVYY24 pKa = 10.69SDD26 pKa = 3.76EE27 pKa = 4.34GNQVDD32 pKa = 3.12IYY34 pKa = 11.59GRR36 pKa = 11.84VQYY39 pKa = 10.28EE40 pKa = 3.75AGEE43 pKa = 4.25RR44 pKa = 11.84DD45 pKa = 3.75YY46 pKa = 11.71QSGGKK51 pKa = 9.76AEE53 pKa = 4.15NFGGDD58 pKa = 3.1GEE60 pKa = 4.47ARR62 pKa = 11.84LGVNVKK68 pKa = 10.69YY69 pKa = 9.76MVNNDD74 pKa = 2.52VDD76 pKa = 5.61LIGKK80 pKa = 8.07LEE82 pKa = 4.05WAVVTEE88 pKa = 4.35GDD90 pKa = 3.98EE91 pKa = 4.27EE92 pKa = 5.27SDD94 pKa = 4.13GVDD97 pKa = 3.31DD98 pKa = 5.65GEE100 pKa = 5.24GISSRR105 pKa = 11.84YY106 pKa = 8.4AWAGFRR112 pKa = 11.84FMDD115 pKa = 3.78TTDD118 pKa = 3.27LTFGRR123 pKa = 11.84VNSPYY128 pKa = 10.98AQLTDD133 pKa = 3.57YY134 pKa = 11.22TDD136 pKa = 3.23VLNIFGGAVAFGDD149 pKa = 4.02EE150 pKa = 5.06LSTTDD155 pKa = 4.58KK156 pKa = 10.92VDD158 pKa = 3.35DD159 pKa = 4.0MVRR162 pKa = 11.84LSYY165 pKa = 11.48ANNGLDD171 pKa = 4.06LRR173 pKa = 11.84AGYY176 pKa = 10.62AFNDD180 pKa = 3.32NDD182 pKa = 5.15KK183 pKa = 10.85IDD185 pKa = 3.92GNTGEE190 pKa = 4.11EE191 pKa = 4.16NRR193 pKa = 11.84WNVSAGYY200 pKa = 7.03TLPMGLGFGAAYY212 pKa = 9.37EE213 pKa = 4.21QISFLDD219 pKa = 5.78AEE221 pKa = 4.98DD222 pKa = 3.4QDD224 pKa = 3.6NWIVGVNYY232 pKa = 9.59TLDD235 pKa = 3.74GLYY238 pKa = 10.49LAAIYY243 pKa = 8.23TEE245 pKa = 4.36RR246 pKa = 11.84EE247 pKa = 3.44QDD249 pKa = 3.51VAGGTNEE256 pKa = 3.83AEE258 pKa = 4.69GYY260 pKa = 8.75EE261 pKa = 3.98LHH263 pKa = 7.42AEE265 pKa = 4.23YY266 pKa = 10.86NVDD269 pKa = 2.92AWKK272 pKa = 10.97VLAQYY277 pKa = 10.91SKK279 pKa = 11.27EE280 pKa = 4.11EE281 pKa = 3.84YY282 pKa = 10.21DD283 pKa = 3.69AAGSTAEE290 pKa = 4.34VDD292 pKa = 3.78TIDD295 pKa = 5.52AITLGVQYY303 pKa = 11.19SLTAKK308 pKa = 9.94AKK310 pKa = 10.44LYY312 pKa = 10.44GEE314 pKa = 4.38YY315 pKa = 10.39VISDD319 pKa = 3.61AADD322 pKa = 3.48EE323 pKa = 4.73DD324 pKa = 4.16DD325 pKa = 4.91LYY327 pKa = 11.75GVGIQYY333 pKa = 10.53NFF335 pKa = 3.35

Molecular weight: 36.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A233RAW8|A0A233RAW8_9GAMM Beta sliding clamp OS=Oceanimonas doudoroffii OX=84158 GN=B6S08_16625 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 9.13RR14 pKa = 11.84SHH16 pKa = 6.17GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.29GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3522

0

3522

1139482

31

1611

323.5

35.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.644 ± 0.05

1.061 ± 0.012

5.209 ± 0.031

6.026 ± 0.034

3.701 ± 0.028

8.093 ± 0.032

2.475 ± 0.024

4.864 ± 0.036

3.307 ± 0.034

12.013 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.642 ± 0.019

3.083 ± 0.029

4.657 ± 0.027

4.459 ± 0.033

6.416 ± 0.04

5.394 ± 0.026

4.848 ± 0.025

7.122 ± 0.033

1.448 ± 0.018

2.537 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski