Wuhan house centipede virus 4

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KF33|A0A1L3KF33_9VIRU Capsid protein OS=Wuhan house centipede virus 4 OX=1923708 PE=3 SV=1
MM1 pKa = 7.55YY2 pKa = 10.35PMEE5 pKa = 5.34DD6 pKa = 3.36FGDD9 pKa = 3.8TFSARR14 pKa = 11.84LYY16 pKa = 10.17AGVRR20 pKa = 11.84HH21 pKa = 5.59VMYY24 pKa = 10.43DD25 pKa = 3.13LSASLRR31 pKa = 11.84GEE33 pKa = 3.6LRR35 pKa = 11.84PRR37 pKa = 11.84VWLALAAFSFLLEE50 pKa = 4.81GIFMAYY56 pKa = 9.54GQGGPVSLAIHH67 pKa = 5.85ILGWIGTVWSWVGRR81 pKa = 11.84WWRR84 pKa = 11.84RR85 pKa = 11.84AQIKK89 pKa = 9.07WEE91 pKa = 4.02QEE93 pKa = 3.44QHH95 pKa = 6.1GYY97 pKa = 8.18RR98 pKa = 11.84TMPEE102 pKa = 4.08SVRR105 pKa = 11.84EE106 pKa = 4.06GSPLLNVTRR115 pKa = 11.84PNFVVGVFALYY126 pKa = 10.03KK127 pKa = 10.16GKK129 pKa = 10.63KK130 pKa = 8.79ILLGTAWRR138 pKa = 11.84YY139 pKa = 9.55RR140 pKa = 11.84DD141 pKa = 3.73NLITAAHH148 pKa = 5.63VVMEE152 pKa = 4.43KK153 pKa = 10.68NFDD156 pKa = 3.91KK157 pKa = 10.96ILIHH161 pKa = 6.54IAKK164 pKa = 8.87TDD166 pKa = 3.41VYY168 pKa = 11.4YY169 pKa = 10.06EE170 pKa = 4.22APDD173 pKa = 3.39WKK175 pKa = 10.73HH176 pKa = 5.12VVGDD180 pKa = 3.81VAIHH184 pKa = 6.32PMQATWPIPSAKK196 pKa = 8.99IDD198 pKa = 4.09TIAKK202 pKa = 9.19SAFVMAFSARR212 pKa = 11.84DD213 pKa = 3.45TSNASSGLLKK223 pKa = 10.54HH224 pKa = 6.37KK225 pKa = 9.24PAKK228 pKa = 10.76AMGFLQYY235 pKa = 10.42EE236 pKa = 5.14GSTLPGFSGSPYY248 pKa = 8.7FTGTKK253 pKa = 9.46VLGMHH258 pKa = 6.85IGGGSAGNFGFSASFIEE275 pKa = 4.27MMIKK279 pKa = 9.86SRR281 pKa = 11.84RR282 pKa = 11.84RR283 pKa = 11.84PEE285 pKa = 4.05SSDD288 pKa = 3.32LEE290 pKa = 4.18MVKK293 pKa = 10.25RR294 pKa = 11.84VLRR297 pKa = 11.84TTRR300 pKa = 11.84VVDD303 pKa = 4.03FDD305 pKa = 4.27YY306 pKa = 11.4EE307 pKa = 4.08QGLDD311 pKa = 3.32EE312 pKa = 4.11TRR314 pKa = 11.84IRR316 pKa = 11.84IDD318 pKa = 2.82GRR320 pKa = 11.84YY321 pKa = 9.05VEE323 pKa = 4.85LPNEE327 pKa = 4.28EE328 pKa = 4.04FWEE331 pKa = 4.35LFDD334 pKa = 6.08DD335 pKa = 5.79EE336 pKa = 5.11EE337 pKa = 5.79FEE339 pKa = 4.89DD340 pKa = 4.17YY341 pKa = 10.44FYY343 pKa = 11.22EE344 pKa = 4.63FEE346 pKa = 6.16DD347 pKa = 5.22GSLHH351 pKa = 6.01QNRR354 pKa = 11.84NKK356 pKa = 10.33KK357 pKa = 9.7KK358 pKa = 9.32KK359 pKa = 9.6KK360 pKa = 8.93QYY362 pKa = 10.62NWDD365 pKa = 3.83AEE367 pKa = 4.22PDD369 pKa = 3.58LGDD372 pKa = 4.09DD373 pKa = 4.41YY374 pKa = 11.46EE375 pKa = 4.81PEE377 pKa = 4.06SAIRR381 pKa = 11.84EE382 pKa = 4.2PVFQEE387 pKa = 4.27VPPSGIPTGVEE398 pKa = 3.86DD399 pKa = 4.82QVTEE403 pKa = 4.15LRR405 pKa = 11.84NMHH408 pKa = 6.36TSLMTSLEE416 pKa = 3.93GLEE419 pKa = 4.15TRR421 pKa = 11.84ISSGQQEE428 pKa = 4.52MKK430 pKa = 10.88DD431 pKa = 3.3NLRR434 pKa = 11.84EE435 pKa = 4.16VFTSMLADD443 pKa = 3.19EE444 pKa = 4.65RR445 pKa = 11.84DD446 pKa = 3.64RR447 pKa = 11.84YY448 pKa = 10.98EE449 pKa = 4.6GMLNQVEE456 pKa = 4.54TKK458 pKa = 10.58LIQLSGTCYY467 pKa = 10.43KK468 pKa = 10.48QIQSDD473 pKa = 3.9LDD475 pKa = 3.7DD476 pKa = 5.02RR477 pKa = 11.84ICRR480 pKa = 11.84VMQSSPIISTTSCAPSTPKK499 pKa = 10.47AQQDD503 pKa = 3.94SVTSKK508 pKa = 8.77NTRR511 pKa = 11.84PLVTHH516 pKa = 5.83WVGMEE521 pKa = 3.89SDD523 pKa = 3.66LQKK526 pKa = 11.01FEE528 pKa = 3.82TWRR531 pKa = 11.84NSVDD535 pKa = 3.31VSRR538 pKa = 11.84SDD540 pKa = 3.78YY541 pKa = 11.21VVLRR545 pKa = 11.84DD546 pKa = 3.29KK547 pKa = 10.9FLRR550 pKa = 11.84DD551 pKa = 3.47GLSLNISQAEE561 pKa = 3.82ALIARR566 pKa = 11.84FRR568 pKa = 11.84NRR570 pKa = 11.84QRR572 pKa = 11.84TTKK575 pKa = 10.32RR576 pKa = 11.84RR577 pKa = 11.84VKK579 pKa = 10.53KK580 pKa = 7.9PTPPTQQ586 pKa = 3.1

Molecular weight: 66.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KF33|A0A1L3KF33_9VIRU Capsid protein OS=Wuhan house centipede virus 4 OX=1923708 PE=3 SV=1
MM1 pKa = 6.95STAEE5 pKa = 3.76QLRR8 pKa = 11.84RR9 pKa = 11.84EE10 pKa = 4.26LQALTDD16 pKa = 3.49KK17 pKa = 10.78MNNLSVAKK25 pKa = 9.77KK26 pKa = 9.75RR27 pKa = 11.84KK28 pKa = 8.16RR29 pKa = 11.84SRR31 pKa = 11.84RR32 pKa = 11.84KK33 pKa = 7.92KK34 pKa = 7.85TSGIAPVPGTSAVAQVQSLGKK55 pKa = 9.14KK56 pKa = 8.03ARR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84RR61 pKa = 11.84GQPSAVGEE69 pKa = 4.3GEE71 pKa = 3.94IVFSRR76 pKa = 11.84EE77 pKa = 3.4EE78 pKa = 4.37LIRR81 pKa = 11.84TLTLPVGKK89 pKa = 8.89ATVTDD94 pKa = 4.43YY95 pKa = 11.55IDD97 pKa = 4.37IIPVNFRR104 pKa = 11.84FLKK107 pKa = 10.66SIGAVFEE114 pKa = 4.69RR115 pKa = 11.84IQWLSLQVYY124 pKa = 7.26WKK126 pKa = 9.15PAVGTTYY133 pKa = 10.97GGLVTYY139 pKa = 10.36GVDD142 pKa = 2.94WDD144 pKa = 4.29FQGGTSLTRR153 pKa = 11.84AQISCYY159 pKa = 9.55TPTVSHH165 pKa = 6.85ALWQDD170 pKa = 3.29AQRR173 pKa = 11.84TPMVLPPARR182 pKa = 11.84LKK184 pKa = 10.46GRR186 pKa = 11.84NWYY189 pKa = 8.44TPDD192 pKa = 4.39SGDD195 pKa = 5.27DD196 pKa = 3.42VDD198 pKa = 4.93KK199 pKa = 11.49GPGRR203 pKa = 11.84ILIAADD209 pKa = 3.95GQSSTVGSVPLGEE222 pKa = 3.87IWACYY227 pKa = 8.82KK228 pKa = 10.85VKK230 pKa = 10.67FSGTRR235 pKa = 11.84SAXQLQSVQLNVQHH249 pKa = 6.64QMTTAYY255 pKa = 8.52HH256 pKa = 5.2TVSLRR261 pKa = 11.84AVPRR265 pKa = 11.84GPLYY269 pKa = 10.26IWTKK273 pKa = 10.84SDD275 pKa = 3.7PAPLNVWTSVEE286 pKa = 4.13EE287 pKa = 4.14ASTTGYY293 pKa = 10.46HH294 pKa = 5.43VATVGSPNSLLLEE307 pKa = 4.21PMTIRR312 pKa = 11.84DD313 pKa = 3.61SSKK316 pKa = 9.71QGAFSFEE323 pKa = 4.0RR324 pKa = 11.84ARR326 pKa = 11.84VDD328 pKa = 3.57DD329 pKa = 5.92AIFQISTYY337 pKa = 9.19SLPYY341 pKa = 8.52GAYY344 pKa = 9.22MLTLDD349 pKa = 5.24VEE351 pKa = 4.32LTPWGSEE358 pKa = 4.45VMPTWDD364 pKa = 4.36FSKK367 pKa = 10.07PWTVEE372 pKa = 3.77LVPAAGMKK380 pKa = 10.0ILTDD384 pKa = 4.33WIIHH388 pKa = 5.58RR389 pKa = 11.84LQWNANSPQVRR400 pKa = 11.84LIARR404 pKa = 11.84AMISVTSAYY413 pKa = 10.19LPRR416 pKa = 11.84VEE418 pKa = 4.94FGCRR422 pKa = 11.84AAVDD426 pKa = 4.06SPADD430 pKa = 3.47VIFGFRR436 pKa = 11.84FEE438 pKa = 5.47AYY440 pKa = 7.34WATGYY445 pKa = 9.66VRR447 pKa = 11.84RR448 pKa = 11.84PRR450 pKa = 11.84YY451 pKa = 9.29HH452 pKa = 7.14SSEE455 pKa = 4.06AVLVQADD462 pKa = 4.02EE463 pKa = 4.7GAPSLDD469 pKa = 3.3EE470 pKa = 6.22DD471 pKa = 3.43EE472 pKa = 4.44WQLVKK477 pKa = 11.06AA478 pKa = 4.72

Molecular weight: 53.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1329

265

586

443.0

50.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.299 ± 0.769

0.903 ± 0.359

5.719 ± 0.372

5.794 ± 0.667

3.988 ± 0.44

6.622 ± 0.25

1.655 ± 0.209

4.214 ± 0.62

4.891 ± 0.292

9.18 ± 1.348

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.784 ± 0.39

2.257 ± 0.337

5.267 ± 0.335

4.364 ± 0.187

7.148 ± 0.113

7.6 ± 0.513

6.02 ± 0.764

7.374 ± 0.58

3.236 ± 0.581

3.612 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski