Pandoravirus macleodensis

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pandoravirus

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 926 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U7UE55|A0A2U7UE55_9VIRU Uncharacterized protein OS=Pandoravirus macleodensis OX=2107707 GN=pmac_cds_29 PE=4 SV=1
MM1 pKa = 7.74SDD3 pKa = 3.08PRR5 pKa = 11.84LGYY8 pKa = 10.06AYY10 pKa = 10.31SYY12 pKa = 10.63GAEE15 pKa = 3.66PSGFVGAAPPSAAGAVWRR33 pKa = 11.84GTGAPRR39 pKa = 11.84TRR41 pKa = 11.84EE42 pKa = 3.98LGRR45 pKa = 11.84SDD47 pKa = 4.11AAVPLAWNAQQPFGAGLAAQQHH69 pKa = 5.88TLRR72 pKa = 11.84QPPPGYY78 pKa = 9.53GRR80 pKa = 11.84SYY82 pKa = 10.87GGTGVAPYY90 pKa = 10.32ASSGYY95 pKa = 10.56SDD97 pKa = 5.4DD98 pKa = 4.24EE99 pKa = 4.74GSAGSDD105 pKa = 2.94ADD107 pKa = 3.73EE108 pKa = 4.93AFSDD112 pKa = 4.26EE113 pKa = 5.01AGSDD117 pKa = 3.6DD118 pKa = 4.82DD119 pKa = 5.91DD120 pKa = 4.28GVVYY124 pKa = 10.8SDD126 pKa = 4.97DD127 pKa = 3.87EE128 pKa = 5.04NGDD131 pKa = 3.41GHH133 pKa = 6.41EE134 pKa = 4.4SARR137 pKa = 11.84GSWGGAVYY145 pKa = 10.01GAAPPQSSWWW155 pKa = 3.52

Molecular weight: 15.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U7UFF9|A0A2U7UFF9_9VIRU Uncharacterized protein OS=Pandoravirus macleodensis OX=2107707 GN=pmac_cds_530 PE=4 SV=1
MM1 pKa = 7.01QGKK4 pKa = 9.65SKK6 pKa = 10.83GAGAKK11 pKa = 7.93GTTRR15 pKa = 11.84ANGQRR20 pKa = 11.84QNALGRR26 pKa = 11.84PRR28 pKa = 11.84GAQPHH33 pKa = 5.92SGVPRR38 pKa = 11.84TYY40 pKa = 10.53LVPIRR45 pKa = 11.84KK46 pKa = 8.81RR47 pKa = 11.84VATPAAVLASLGVYY61 pKa = 10.42GNANARR67 pKa = 11.84GAGHH71 pKa = 7.38AEE73 pKa = 4.08QEE75 pKa = 4.27NEE77 pKa = 4.48HH78 pKa = 6.51YY79 pKa = 10.83DD80 pKa = 3.66ADD82 pKa = 4.0SDD84 pKa = 3.8ATTTVVTFVRR94 pKa = 11.84LTKK97 pKa = 10.67AQMARR102 pKa = 11.84GRR104 pKa = 11.84RR105 pKa = 11.84RR106 pKa = 11.84AWEE109 pKa = 3.86EE110 pKa = 3.35RR111 pKa = 11.84CARR114 pKa = 11.84RR115 pKa = 11.84RR116 pKa = 11.84ARR118 pKa = 11.84SQQPVPASQACGQCNATVYY137 pKa = 10.4GAVDD141 pKa = 3.52MCPSCGAALVHH152 pKa = 6.58IVAAVAADD160 pKa = 3.54QDD162 pKa = 3.48VDD164 pKa = 3.53RR165 pKa = 6.46

Molecular weight: 17.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

926

0

926

374449

49

2341

404.4

43.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.695 ± 0.095

2.481 ± 0.056

7.628 ± 0.088

3.926 ± 0.06

2.277 ± 0.036

7.797 ± 0.095

2.931 ± 0.051

3.369 ± 0.036

2.044 ± 0.056

7.93 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.113 ± 0.034

2.477 ± 0.034

6.25 ± 0.073

2.811 ± 0.056

8.337 ± 0.074

6.343 ± 0.077

5.91 ± 0.063

7.488 ± 0.066

1.908 ± 0.042

2.285 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski