Xylanimonas allomyrinae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae; Xylanimonas

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3038 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P6EMI1|A0A4P6EMI1_9MICO M3 family peptidase OS=Xylanimonas allomyrinae OX=2509459 GN=ET495_03540 PE=3 SV=1
MM1 pKa = 7.66ASYY4 pKa = 10.55PEE6 pKa = 3.88NLQYY10 pKa = 10.92SRR12 pKa = 11.84EE13 pKa = 4.29HH14 pKa = 5.94EE15 pKa = 4.3WVDD18 pKa = 3.22ASSPAVIGITSHH30 pKa = 7.0AADD33 pKa = 3.45ALGDD37 pKa = 3.83VVYY40 pKa = 11.17LEE42 pKa = 4.5LPEE45 pKa = 4.45VGAQISAGDD54 pKa = 3.57VVGEE58 pKa = 4.1IEE60 pKa = 4.32STKK63 pKa = 10.69SVSEE67 pKa = 4.26LYY69 pKa = 10.75APVSGTVVEE78 pKa = 4.64VNQAAIDD85 pKa = 4.11DD86 pKa = 4.37PALVNSDD93 pKa = 3.5PFGAGWLLKK102 pKa = 10.78VEE104 pKa = 4.05ITSRR108 pKa = 11.84GDD110 pKa = 3.54LIDD113 pKa = 3.8AAEE116 pKa = 4.11YY117 pKa = 10.83AVLAGG122 pKa = 4.09

Molecular weight: 12.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P6ERA5|A0A4P6ERA5_9MICO Aminomethyltransferase OS=Xylanimonas allomyrinae OX=2509459 GN=gcvT PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3038

0

3038

992373

32

3884

326.7

34.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.797 ± 0.075

0.608 ± 0.012

6.252 ± 0.039

4.981 ± 0.043

2.61 ± 0.025

9.402 ± 0.038

2.166 ± 0.021

3.111 ± 0.032

1.595 ± 0.026

9.981 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.576 ± 0.016

1.592 ± 0.023

5.975 ± 0.039

2.695 ± 0.018

7.927 ± 0.066

4.989 ± 0.031

6.487 ± 0.058

9.97 ± 0.041

1.504 ± 0.02

1.782 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski