Lichenibacterium minor

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Lichenibacteriaceae; Lichenibacterium

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5408 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q2U9L3|A0A4Q2U9L3_9RHIZ Porphobilinogen deaminase OS=Lichenibacterium minor OX=2316528 GN=hemC PE=3 SV=1
MM1 pKa = 7.32GCAGPCALDD10 pKa = 3.31TSPPFDD16 pKa = 3.35RR17 pKa = 11.84AAPAFCGDD25 pKa = 3.89AGVALPLEE33 pKa = 4.77DD34 pKa = 4.43ALADD38 pKa = 3.71AFRR41 pKa = 11.84CGAAVACVGVAAPPPDD57 pKa = 3.77AVPAFF62 pKa = 3.93

Molecular weight: 5.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1RUI9|A0A4V1RUI9_9RHIZ Oxidase OS=Lichenibacterium minor OX=2316528 GN=D3273_14450 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 8.8IVRR12 pKa = 11.84KK13 pKa = 9.24RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.55GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84RR29 pKa = 11.84IIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5408

0

5408

1674681

26

2776

309.7

33.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.621 ± 0.062

0.857 ± 0.009

6.126 ± 0.03

4.878 ± 0.031

3.478 ± 0.026

9.429 ± 0.036

2.074 ± 0.015

3.949 ± 0.025

2.472 ± 0.028

10.157 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.22 ± 0.015

1.956 ± 0.018

5.821 ± 0.03

2.469 ± 0.021

8.139 ± 0.041

5.016 ± 0.026

5.064 ± 0.025

8.073 ± 0.028

1.277 ± 0.014

1.921 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski