Arenimonas terrae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3016 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C4RUZ2|A0A5C4RUZ2_9GAMM Sterol desaturase family protein OS=Arenimonas terrae OX=2546226 GN=E1B00_02885 PE=4 SV=1
MM1 pKa = 7.46NAQPLQALLVEE12 pKa = 4.94PDD14 pKa = 3.37QAGTFYY20 pKa = 10.52LTASDD25 pKa = 5.06LGPLQEE31 pKa = 4.51AAHH34 pKa = 6.75EE35 pKa = 4.3IGFLCIPLDD44 pKa = 4.61LSGCADD50 pKa = 3.24KK51 pKa = 10.2TALMRR56 pKa = 11.84AFAEE60 pKa = 4.17AFEE63 pKa = 4.36FPDD66 pKa = 3.42WFGHH70 pKa = 5.58NWDD73 pKa = 4.83ALADD77 pKa = 3.96CLGDD81 pKa = 4.98LDD83 pKa = 3.93WLPAEE88 pKa = 5.12GYY90 pKa = 10.45VLGLQNVQALRR101 pKa = 11.84AADD104 pKa = 3.73PADD107 pKa = 3.8YY108 pKa = 8.25ATLVAVLEE116 pKa = 4.96GVCEE120 pKa = 4.16DD121 pKa = 2.73WRR123 pKa = 11.84EE124 pKa = 3.85RR125 pKa = 11.84GTPFWAFIALPDD137 pKa = 3.84AQFDD141 pKa = 4.12ALPSS145 pKa = 3.56

Molecular weight: 15.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C4RWZ5|A0A5C4RWZ5_9GAMM Glycosyltransferase OS=Arenimonas terrae OX=2546226 GN=E1B00_06595 PE=4 SV=1
MM1 pKa = 7.0GAGRR5 pKa = 11.84GGHH8 pKa = 5.79CSVRR12 pKa = 11.84LRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84LRR18 pKa = 11.84LAGVATAGRR27 pKa = 11.84RR28 pKa = 11.84KK29 pKa = 9.67GRR31 pKa = 11.84RR32 pKa = 11.84PRR34 pKa = 11.84RR35 pKa = 11.84ASAGGLSMFALGSGLILWAWVNLSLGLPRR64 pKa = 11.84HH65 pKa = 6.18AGIAVPPQRR74 pKa = 11.84LRR76 pKa = 11.84ARR78 pKa = 11.84RR79 pKa = 11.84LAGGLQLALSPAVFVAGWGWEE100 pKa = 3.92FGLVYY105 pKa = 9.27WAAMLMLCAIAWVLVLARR123 pKa = 11.84WPRR126 pKa = 11.84RR127 pKa = 11.84RR128 pKa = 11.84LRR130 pKa = 11.84AAVVLSLVILALSWLAPSVV149 pKa = 3.38

Molecular weight: 16.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3016

0

3016

1012916

35

4654

335.8

36.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.48 ± 0.077

0.821 ± 0.013

5.752 ± 0.04

5.646 ± 0.043

3.445 ± 0.031

8.81 ± 0.043

2.148 ± 0.021

3.805 ± 0.032

2.627 ± 0.037

11.232 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.076 ± 0.018

2.259 ± 0.03

5.626 ± 0.04

3.45 ± 0.026

7.996 ± 0.043

4.91 ± 0.029

4.679 ± 0.045

7.472 ± 0.044

1.527 ± 0.022

2.239 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski