Synechococcus virus P60

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Tiilvirus

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8W6Y6|Q8W6Y6_9CAUD Uncharacterized protein OS=Synechococcus virus P60 OX=151528 GN=P60_gp01 PE=4 SV=1
MM1 pKa = 7.92TDD3 pKa = 2.94TTIYY7 pKa = 9.95QLPVHH12 pKa = 6.83WAPALINDD20 pKa = 4.05DD21 pKa = 3.29WTGLEE26 pKa = 4.17EE27 pKa = 4.22QDD29 pKa = 4.65EE30 pKa = 4.49EE31 pKa = 4.47QLMAFLFNEE40 pKa = 4.2LAGEE44 pKa = 4.73GVCITLDD51 pKa = 3.52PEE53 pKa = 4.14EE54 pKa = 4.88EE55 pKa = 4.14PFFMKK60 pKa = 10.44HH61 pKa = 5.73HH62 pKa = 6.8DD63 pKa = 3.77AKK65 pKa = 10.91PYY67 pKa = 10.62GCLACDD73 pKa = 4.24CYY75 pKa = 11.38NYY77 pKa = 10.31TVIDD81 pKa = 3.82MNN83 pKa = 4.28

Molecular weight: 9.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8W6W8|Q8W6W8_9CAUD Uncharacterized protein OS=Synechococcus virus P60 OX=151528 GN=P60_gp44 PE=4 SV=1
MM1 pKa = 7.72APRR4 pKa = 11.84RR5 pKa = 11.84TSNPGKK11 pKa = 8.65SARR14 pKa = 11.84YY15 pKa = 8.9YY16 pKa = 10.47RR17 pKa = 11.84SNPKK21 pKa = 10.01ARR23 pKa = 11.84AKK25 pKa = 10.57KK26 pKa = 9.88NAAQRR31 pKa = 11.84KK32 pKa = 8.03RR33 pKa = 11.84NKK35 pKa = 7.38TTAAKK40 pKa = 10.18KK41 pKa = 10.24YY42 pKa = 9.61RR43 pKa = 11.84AEE45 pKa = 3.88LNAARR50 pKa = 11.84RR51 pKa = 11.84KK52 pKa = 10.05DD53 pKa = 3.45GNYY56 pKa = 10.37GKK58 pKa = 10.66GGKK61 pKa = 9.64DD62 pKa = 3.33YY63 pKa = 11.63SHH65 pKa = 6.78TKK67 pKa = 9.48SGKK70 pKa = 9.18LVRR73 pKa = 11.84EE74 pKa = 3.9SPKK77 pKa = 10.4RR78 pKa = 11.84NRR80 pKa = 11.84ARR82 pKa = 11.84QGAGGRR88 pKa = 11.84PKK90 pKa = 10.48RR91 pKa = 11.84KK92 pKa = 9.62

Molecular weight: 10.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

14503

42

1639

263.7

29.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.77 ± 0.545

0.807 ± 0.157

6.592 ± 0.256

6.371 ± 0.369

3.572 ± 0.182

7.916 ± 0.586

1.586 ± 0.193

4.751 ± 0.181

4.992 ± 0.308

8.191 ± 0.338

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.303 ± 0.177

4.544 ± 0.311

4.571 ± 0.244

4.964 ± 0.313

5.461 ± 0.326

6.213 ± 0.242

6.419 ± 0.38

6.109 ± 0.278

1.434 ± 0.146

3.434 ± 0.211
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski