Cricetibacter osteomyelitidis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Cricetibacter

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2525 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R2SX63|A0A4R2SX63_9PAST Na(+)-translocating NADH-quinone reductase subunit B OS=Cricetibacter osteomyelitidis OX=1521931 GN=nqrB PE=3 SV=1
MM1 pKa = 7.58AIVGVFYY8 pKa = 10.81GSDD11 pKa = 3.07TGNTEE16 pKa = 4.47NIAKK20 pKa = 9.24MIQKK24 pKa = 9.58QLGNEE29 pKa = 3.93LVDD32 pKa = 3.33IRR34 pKa = 11.84DD35 pKa = 3.34IAKK38 pKa = 10.28SSKK41 pKa = 10.46EE42 pKa = 3.92DD43 pKa = 3.08IEE45 pKa = 4.87AYY47 pKa = 10.47NFLLIGIPTWYY58 pKa = 10.2YY59 pKa = 11.6GEE61 pKa = 4.69AQCDD65 pKa = 3.26WDD67 pKa = 5.24DD68 pKa = 4.33FFPTLEE74 pKa = 5.54DD75 pKa = 3.08IDD77 pKa = 4.52FSEE80 pKa = 4.57KK81 pKa = 10.26LVAIFGCGDD90 pKa = 3.22QEE92 pKa = 4.63DD93 pKa = 4.32YY94 pKa = 11.51SEE96 pKa = 4.47YY97 pKa = 10.75FCDD100 pKa = 4.41AMGTVRR106 pKa = 11.84DD107 pKa = 3.94IIEE110 pKa = 4.2PRR112 pKa = 11.84GATIVGHH119 pKa = 6.6WPTEE123 pKa = 3.83GYY125 pKa = 8.73TFDD128 pKa = 3.61EE129 pKa = 4.76SKK131 pKa = 11.43ALVDD135 pKa = 4.35DD136 pKa = 3.88NTFVGLCIDD145 pKa = 4.19EE146 pKa = 4.82DD147 pKa = 3.92RR148 pKa = 11.84QPEE151 pKa = 4.13LTAEE155 pKa = 4.36RR156 pKa = 11.84VKK158 pKa = 10.6QWVNQVYY165 pKa = 11.02DD166 pKa = 4.15EE167 pKa = 4.53MCLSEE172 pKa = 4.39LAA174 pKa = 4.16

Molecular weight: 19.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R2T8G9|A0A4R2T8G9_9PAST AraC family transcriptional regulator OS=Cricetibacter osteomyelitidis OX=1521931 GN=EDC44_1368 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2525

0

2525

819869

27

2869

324.7

36.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.41 ± 0.051

0.999 ± 0.018

5.135 ± 0.05

6.025 ± 0.049

4.41 ± 0.044

6.781 ± 0.051

2.03 ± 0.024

7.165 ± 0.044

6.081 ± 0.053

10.332 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.423 ± 0.025

5.021 ± 0.052

3.723 ± 0.026

4.73 ± 0.041

4.269 ± 0.04

5.828 ± 0.042

5.444 ± 0.072

6.643 ± 0.046

1.189 ± 0.02

3.36 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski