Plasticicumulans lactativorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Competibacteraceae; Plasticicumulans

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3868 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R2L2Z5|A0A4R2L2Z5_9GAMM Uncharacterized protein (TIGR00369 family) OS=Plasticicumulans lactativorans OX=1133106 GN=EV699_11165 PE=4 SV=1
MM1 pKa = 7.48SNIPSDD7 pKa = 3.96LLYY10 pKa = 10.8ASSHH14 pKa = 4.0EE15 pKa = 4.15WVRR18 pKa = 11.84QEE20 pKa = 3.7EE21 pKa = 4.5DD22 pKa = 3.35GTVTVGISDD31 pKa = 4.04HH32 pKa = 6.49AQTALGDD39 pKa = 3.76LVYY42 pKa = 11.12VEE44 pKa = 4.47VPEE47 pKa = 4.43AGRR50 pKa = 11.84EE51 pKa = 4.06VEE53 pKa = 4.09AAEE56 pKa = 4.12ACAVVEE62 pKa = 4.41SVKK65 pKa = 10.67AASDD69 pKa = 3.76VYY71 pKa = 11.29APIAGEE77 pKa = 4.1VVEE80 pKa = 5.93ANAQLADD87 pKa = 3.62QPEE90 pKa = 4.77LVNQDD95 pKa = 3.29PYY97 pKa = 10.6GAGWLFRR104 pKa = 11.84LRR106 pKa = 11.84PSGGVDD112 pKa = 3.13GLLSAEE118 pKa = 4.52AYY120 pKa = 9.58AATLADD126 pKa = 3.55

Molecular weight: 13.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R2L5Z3|A0A4R2L5Z3_9GAMM Uncharacterized protein DUF3108 OS=Plasticicumulans lactativorans OX=1133106 GN=EV699_11232 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLHH11 pKa = 6.3RR12 pKa = 11.84KK13 pKa = 6.84RR14 pKa = 11.84THH16 pKa = 5.74GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.38NGRR28 pKa = 11.84LVIKK32 pKa = 10.35ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.21GRR39 pKa = 11.84ARR41 pKa = 11.84LTPP44 pKa = 3.93

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3868

0

3868

1298026

25

2898

335.6

36.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.402 ± 0.068

1.0 ± 0.012

5.485 ± 0.033

5.514 ± 0.034

3.414 ± 0.023

8.687 ± 0.034

2.325 ± 0.018

3.968 ± 0.035

2.228 ± 0.029

11.662 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.888 ± 0.02

2.117 ± 0.024

5.576 ± 0.039

3.085 ± 0.023

8.172 ± 0.044

4.295 ± 0.026

4.726 ± 0.022

7.765 ± 0.039

1.426 ± 0.017

2.268 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski