Desertihabitans brevis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Desertihabitans

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3682 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A367YYA9|A0A367YYA9_9ACTN DNA-(apurinic or apyrimidinic site) lyase OS=Desertihabitans brevis OX=2268447 GN=DT076_08310 PE=3 SV=1
MM1 pKa = 7.76ALTACGTRR9 pKa = 11.84AEE11 pKa = 4.36EE12 pKa = 4.63GGGGAEE18 pKa = 4.39GGAGGGGGEE27 pKa = 4.57TKK29 pKa = 9.84TAVIGVVAPLSGDD42 pKa = 3.91LAPLGLGIQHH52 pKa = 5.84SVEE55 pKa = 4.26LAVQQANEE63 pKa = 4.15SGAIPGWTLEE73 pKa = 4.09VQPEE77 pKa = 4.04DD78 pKa = 4.06DD79 pKa = 3.7QATPDD84 pKa = 3.46VGRR87 pKa = 11.84NAATSLSSDD96 pKa = 3.3ADD98 pKa = 3.72VVAMVGPLNSSVGQAVQPVFDD119 pKa = 4.21AAGILQVSPANTNPSLTRR137 pKa = 11.84GANFDD142 pKa = 3.78TAPEE146 pKa = 4.14RR147 pKa = 11.84TYY149 pKa = 9.06PTYY152 pKa = 10.77FRR154 pKa = 11.84TCTTDD159 pKa = 3.68SIQGPFAARR168 pKa = 11.84YY169 pKa = 8.76LYY171 pKa = 7.87EE172 pKa = 3.93TAGITRR178 pKa = 11.84IATVHH183 pKa = 6.48DD184 pKa = 4.01KK185 pKa = 10.79KK186 pKa = 11.08AYY188 pKa = 9.12GQGLVEE194 pKa = 4.32AFSAEE199 pKa = 3.98FEE201 pKa = 4.33EE202 pKa = 5.12LGGEE206 pKa = 3.96IVAAEE211 pKa = 4.44TINPEE216 pKa = 4.18DD217 pKa = 4.4DD218 pKa = 3.56NFSAVITSVGSGDD231 pKa = 4.16PEE233 pKa = 3.64ALYY236 pKa = 11.11YY237 pKa = 10.59GGEE240 pKa = 4.23YY241 pKa = 9.09PQSGPLSQQMKK252 pKa = 10.23AAGLDD257 pKa = 3.38IPLMGGDD264 pKa = 3.66GMYY267 pKa = 10.35SPEE270 pKa = 4.3YY271 pKa = 10.16IEE273 pKa = 5.23LAGEE277 pKa = 3.98QSEE280 pKa = 4.86GDD282 pKa = 3.48LATSVGAPVEE292 pKa = 4.39DD293 pKa = 4.9LPSAQQFVTDD303 pKa = 3.71YY304 pKa = 9.88EE305 pKa = 4.35AAGFPDD311 pKa = 4.53PYY313 pKa = 9.75EE314 pKa = 4.59AYY316 pKa = 10.19GAYY319 pKa = 10.2SYY321 pKa = 11.33DD322 pKa = 3.3AAQAVIEE329 pKa = 4.07ALKK332 pKa = 10.89VSLPEE337 pKa = 4.8AEE339 pKa = 4.22TAEE342 pKa = 4.52DD343 pKa = 3.39ARR345 pKa = 11.84EE346 pKa = 4.12ATVEE350 pKa = 3.87AMASVSFEE358 pKa = 3.98GATGPVAFDD367 pKa = 3.34EE368 pKa = 5.33FGDD371 pKa = 3.55NTTRR375 pKa = 11.84ILTAYY380 pKa = 9.08KK381 pKa = 10.37VEE383 pKa = 4.25GGAWVADD390 pKa = 3.57QTDD393 pKa = 3.69EE394 pKa = 5.47FEE396 pKa = 4.58DD397 pKa = 3.64

Molecular weight: 40.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A367YR83|A0A367YR83_9ACTN ABC transporter permease OS=Desertihabitans brevis OX=2268447 GN=DT076_16485 PE=3 SV=1
MM1 pKa = 7.61KK2 pKa = 10.31VRR4 pKa = 11.84NSLRR8 pKa = 11.84ALKK11 pKa = 9.65KK12 pKa = 10.17IPGAQIVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84TFVINKK30 pKa = 8.79RR31 pKa = 11.84NPRR34 pKa = 11.84FKK36 pKa = 10.78ARR38 pKa = 11.84QGG40 pKa = 3.28

Molecular weight: 4.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3682

0

3682

1212445

31

2815

329.3

35.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.039 ± 0.05

0.711 ± 0.011

6.201 ± 0.037

5.978 ± 0.036

2.642 ± 0.026

9.343 ± 0.038

2.158 ± 0.022

2.773 ± 0.033

1.294 ± 0.021

10.737 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.64 ± 0.017

1.545 ± 0.023

6.164 ± 0.037

3.024 ± 0.022

8.277 ± 0.055

5.092 ± 0.03

6.188 ± 0.036

9.712 ± 0.041

1.642 ± 0.017

1.84 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski