Xanthomonas virus Xp10

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Xipdecavirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 60 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7Y5G6|Q7Y5G6_9CAUD 50L OS=Xanthomonas virus Xp10 OX=232237 PE=4 SV=1
MM1 pKa = 7.93IFIIKK6 pKa = 9.98QYY8 pKa = 9.78LTAQDD13 pKa = 2.91QGTIVGYY20 pKa = 11.12ADD22 pKa = 4.11TEE24 pKa = 4.35DD25 pKa = 3.47EE26 pKa = 4.42AYY28 pKa = 10.63SYY30 pKa = 10.95IEE32 pKa = 4.44SLPEE36 pKa = 4.02DD37 pKa = 3.55EE38 pKa = 4.23QFEE41 pKa = 4.67YY42 pKa = 10.8EE43 pKa = 4.37VLGIAQVV50 pKa = 3.12

Molecular weight: 5.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7Y5I4|Q7Y5I4_9CAUD 33L OS=Xanthomonas virus Xp10 OX=232237 PE=4 SV=1
MM1 pKa = 6.74YY2 pKa = 9.4WPWRR6 pKa = 11.84ACTLSCGVGSRR17 pKa = 11.84AHH19 pKa = 7.02RR20 pKa = 11.84ILVSSMIVMMATAAPTAVQTTFSRR44 pKa = 11.84GACATPRR51 pKa = 11.84SVCTIGTSAMSVVRR65 pKa = 11.84GLVAAPRR72 pKa = 11.84CTTPNMSWSTEE83 pKa = 3.74DD84 pKa = 4.16LLCKK88 pKa = 9.63RR89 pKa = 11.84TNTAPVVVVSQTKK102 pKa = 9.96KK103 pKa = 9.39GSAFEE108 pKa = 4.45TVTNTLVGFSINWCANMIILPMFGMPISGTTAFHH142 pKa = 6.15MGIIFTAISIARR154 pKa = 11.84GYY156 pKa = 8.56VLRR159 pKa = 11.84RR160 pKa = 11.84VFNKK164 pKa = 8.22ITEE167 pKa = 4.24RR168 pKa = 11.84SLSKK172 pKa = 10.98

Molecular weight: 18.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

60

0

60

13372

50

1574

222.9

24.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.045 ± 0.567

0.987 ± 0.17

5.751 ± 0.193

5.34 ± 0.313

2.864 ± 0.164

7.972 ± 0.197

1.855 ± 0.231

4.816 ± 0.181

5.168 ± 0.369

8.578 ± 0.293

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.445 ± 0.228

3.844 ± 0.204

3.911 ± 0.254

4.868 ± 0.273

5.646 ± 0.23

6.88 ± 0.301

6.222 ± 0.406

6.977 ± 0.291

1.6 ± 0.156

3.231 ± 0.204
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski