Faeces associated gemycircularvirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus geras3; Gerygone associated gemycircularvirus 3

Average proteome isoelectric point is 7.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T1YTC0|T1YTC0_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 3 OX=1391032 PE=4 SV=1
MM1 pKa = 7.55PPKK4 pKa = 10.38AKK6 pKa = 9.95PNPYY10 pKa = 9.72FADD13 pKa = 3.11GRR15 pKa = 11.84YY16 pKa = 9.19FLLTYY21 pKa = 8.77AQCGTLDD28 pKa = 2.95AWTVNDD34 pKa = 3.97HH35 pKa = 6.64LAFLGAEE42 pKa = 4.25CIIGRR47 pKa = 11.84EE48 pKa = 4.02LHH50 pKa = 6.83ADD52 pKa = 3.72GGTHH56 pKa = 6.78LHH58 pKa = 6.66AFCDD62 pKa = 5.08FSRR65 pKa = 11.84RR66 pKa = 11.84FRR68 pKa = 11.84SRR70 pKa = 11.84RR71 pKa = 11.84SDD73 pKa = 3.3VFDD76 pKa = 3.2VGGRR80 pKa = 11.84HH81 pKa = 6.27PNLVPSYY88 pKa = 8.82GKK90 pKa = 9.76PEE92 pKa = 3.92GGYY95 pKa = 10.65DD96 pKa = 3.55YY97 pKa = 10.74AIKK100 pKa = 10.94DD101 pKa = 3.59GDD103 pKa = 4.03VVAGGLSRR111 pKa = 11.84PSGRR115 pKa = 11.84GVYY118 pKa = 10.06EE119 pKa = 4.89DD120 pKa = 3.54VSSWSIIVGQEE131 pKa = 3.87SEE133 pKa = 4.58GEE135 pKa = 3.92FWKK138 pKa = 10.87CVARR142 pKa = 11.84LDD144 pKa = 4.55PRR146 pKa = 11.84ALCTNYY152 pKa = 10.56NSLRR156 pKa = 11.84AYY158 pKa = 10.43ANWRR162 pKa = 11.84YY163 pKa = 9.76RR164 pKa = 11.84PAPVPYY170 pKa = 8.89EE171 pKa = 4.04HH172 pKa = 7.45PAGIEE177 pKa = 4.08FEE179 pKa = 4.46LGMVPEE185 pKa = 4.27LAVWRR190 pKa = 11.84EE191 pKa = 3.56IALGADD197 pKa = 3.77RR198 pKa = 11.84EE199 pKa = 4.16RR200 pKa = 11.84GILVIFGDD208 pKa = 3.67TRR210 pKa = 11.84LGKK213 pKa = 7.65TLWARR218 pKa = 11.84SIGPHH223 pKa = 6.89IYY225 pKa = 10.2TIGQMSGEE233 pKa = 4.38VILRR237 pKa = 11.84DD238 pKa = 4.51GPDD241 pKa = 2.84ADD243 pKa = 3.79YY244 pKa = 11.53AVFDD248 pKa = 4.39DD249 pKa = 4.11MRR251 pKa = 11.84GGLEE255 pKa = 4.55FFHH258 pKa = 6.92GWKK261 pKa = 9.71EE262 pKa = 3.86WFGCQSVVTVKK273 pKa = 10.58KK274 pKa = 10.58LYY276 pKa = 9.92RR277 pKa = 11.84DD278 pKa = 3.77PVQMPWGKK286 pKa = 9.33PVIWLSNRR294 pKa = 11.84DD295 pKa = 3.57PRR297 pKa = 11.84DD298 pKa = 3.33EE299 pKa = 4.41LRR301 pKa = 11.84DD302 pKa = 3.78SITNHH307 pKa = 4.96TSMGKK312 pKa = 8.57QASIEE317 pKa = 4.03GDD319 pKa = 3.59IKK321 pKa = 10.77WLDD324 pKa = 3.56GNCIFVEE331 pKa = 4.06LDD333 pKa = 3.15HH334 pKa = 7.64AIFRR338 pKa = 11.84ANTEE342 pKa = 3.84

Molecular weight: 38.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1YTC0|T1YTC0_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 3 OX=1391032 PE=4 SV=1
MM1 pKa = 7.78AYY3 pKa = 9.79RR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 10.16SYY8 pKa = 10.45SSRR11 pKa = 11.84VKK13 pKa = 10.44RR14 pKa = 11.84RR15 pKa = 11.84TGRR18 pKa = 11.84TARR21 pKa = 11.84RR22 pKa = 11.84GGRR25 pKa = 11.84RR26 pKa = 11.84PASQQKK32 pKa = 9.42RR33 pKa = 11.84RR34 pKa = 11.84TYY36 pKa = 9.73RR37 pKa = 11.84KK38 pKa = 9.3KK39 pKa = 10.36GAMSKK44 pKa = 10.36KK45 pKa = 10.15RR46 pKa = 11.84ILNLTSRR53 pKa = 11.84KK54 pKa = 9.72KK55 pKa = 10.4RR56 pKa = 11.84DD57 pKa = 3.46TMLTWTNTTTSGGQVSPRR75 pKa = 11.84PDD77 pKa = 3.01AAYY80 pKa = 10.91VKK82 pKa = 10.26GDD84 pKa = 3.51TGGSFLWVPTARR96 pKa = 11.84DD97 pKa = 3.49LVVGSNLATIALEE110 pKa = 4.1SARR113 pKa = 11.84TSTTCYY119 pKa = 9.77MRR121 pKa = 11.84GLSEE125 pKa = 4.49KK126 pKa = 10.44LRR128 pKa = 11.84LSTSSGVPWFHH139 pKa = 7.15RR140 pKa = 11.84RR141 pKa = 11.84ICFTFKK147 pKa = 10.42GAQPFQSNFTGDD159 pKa = 3.08TGSNQLYY166 pKa = 10.44LEE168 pKa = 4.35NSNGLTRR175 pKa = 11.84LMFNQAVTIPPNYY188 pKa = 9.18QNQINSVIFKK198 pKa = 10.02GAQGVDD204 pKa = 2.93WSDD207 pKa = 3.79VIIAPIDD214 pKa = 3.39TRR216 pKa = 11.84RR217 pKa = 11.84ISLKK221 pKa = 10.16YY222 pKa = 10.23DD223 pKa = 3.26RR224 pKa = 11.84TWTYY228 pKa = 11.2RR229 pKa = 11.84SGNANGTVMEE239 pKa = 4.38KK240 pKa = 10.82KK241 pKa = 9.29MYY243 pKa = 10.66HH244 pKa = 6.38PMNKK248 pKa = 10.02NIVYY252 pKa = 10.49DD253 pKa = 4.11DD254 pKa = 4.79DD255 pKa = 4.52EE256 pKa = 6.64SGTSEE261 pKa = 3.89TTSYY265 pKa = 11.5YY266 pKa = 10.97SVDD269 pKa = 3.49SKK271 pKa = 11.82AGMGDD276 pKa = 3.78YY277 pKa = 10.33YY278 pKa = 11.29VWDD281 pKa = 4.18IFTSGPGGTATDD293 pKa = 4.87LLRR296 pKa = 11.84CDD298 pKa = 4.3ISSTLYY304 pKa = 9.11WHH306 pKa = 7.03EE307 pKa = 4.1KK308 pKa = 9.32

Molecular weight: 34.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

650

308

342

325.0

36.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.462 ± 0.592

1.538 ± 0.354

6.615 ± 0.688

4.154 ± 1.181

3.846 ± 0.58

9.538 ± 0.689

2.0 ± 0.644

4.923 ± 0.441

4.769 ± 0.879

6.615 ± 0.484

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.308 ± 0.386

3.846 ± 0.643

4.769 ± 0.752

2.462 ± 0.493

8.615 ± 0.503

7.538 ± 1.587

6.923 ± 2.381

5.692 ± 0.516

2.769 ± 0.312

4.615 ± 0.364
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski