Torque teno mini virus 1 (isolate TLMV-CBD279)

Taxonomy: Viruses; Anelloviridae; Betatorquevirus; Torque teno mini virus 1

Average proteome isoelectric point is 7.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9QU31|ORF2_TTVB1 Uncharacterized ORF2 protein OS=Torque teno mini virus 1 (isolate TLMV-CBD279) OX=766183 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.81SSFLTPAVYY10 pKa = 10.46SKK12 pKa = 11.37NGLEE16 pKa = 4.1NQWINTIWNTHH27 pKa = 6.1DD28 pKa = 5.49LMCGCNNAIKK38 pKa = 10.54HH39 pKa = 5.99LFDD42 pKa = 3.31ILKK45 pKa = 10.55KK46 pKa = 10.55KK47 pKa = 10.77GEE49 pKa = 4.07QLCLPSTTEE58 pKa = 3.78DD59 pKa = 4.06AGTQTHH65 pKa = 6.31GEE67 pKa = 4.12EE68 pKa = 3.97KK69 pKa = 10.5DD70 pKa = 3.54YY71 pKa = 11.44DD72 pKa = 4.13LEE74 pKa = 5.06EE75 pKa = 5.85GDD77 pKa = 5.55LDD79 pKa = 4.7ALFANDD85 pKa = 4.41FEE87 pKa = 5.32EE88 pKa = 6.12DD89 pKa = 3.61DD90 pKa = 4.0GG91 pKa = 5.43

Molecular weight: 10.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9QU30|CAPSD_TTVB1 Capsid protein OS=Torque teno mini virus 1 (isolate TLMV-CBD279) OX=766183 GN=ORF1 PE=3 SV=1
MM1 pKa = 7.34TFYY4 pKa = 11.15SSGEE8 pKa = 4.06EE9 pKa = 4.25AQHH12 pKa = 5.69QWKK15 pKa = 9.2QLQTQQNKK23 pKa = 9.37KK24 pKa = 9.66NSPRR28 pKa = 11.84PVTSSRR34 pKa = 11.84DD35 pKa = 3.38FRR37 pKa = 11.84SRR39 pKa = 11.84VQGNQSNTIFTHH51 pKa = 5.09LTKK54 pKa = 10.59SAANSQCQLQKK65 pKa = 10.92DD66 pKa = 4.11LKK68 pKa = 10.2KK69 pKa = 9.2TLQLQHH75 pKa = 6.81FLQTLEE81 pKa = 4.42QKK83 pKa = 9.37TSPSKK88 pKa = 10.62HH89 pKa = 4.61KK90 pKa = 10.47RR91 pKa = 11.84KK92 pKa = 7.63RR93 pKa = 11.84TKK95 pKa = 9.98YY96 pKa = 10.17RR97 pKa = 11.84RR98 pKa = 11.84TKK100 pKa = 10.13KK101 pKa = 10.29SKK103 pKa = 8.4HH104 pKa = 5.41HH105 pKa = 5.84SRR107 pKa = 11.84KK108 pKa = 8.51KK109 pKa = 6.73TTSSSSSSEE118 pKa = 3.76RR119 pKa = 11.84DD120 pKa = 3.09STTGRR125 pKa = 11.84EE126 pKa = 4.37SEE128 pKa = 4.39SSS130 pKa = 3.22

Molecular weight: 15.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

883

91

662

294.3

34.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.831 ± 0.554

1.359 ± 0.383

4.643 ± 1.232

6.002 ± 0.757

4.077 ± 0.276

4.304 ± 0.67

2.718 ± 0.685

5.21 ± 1.513

8.947 ± 1.066

9.173 ± 0.775

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.246 ± 0.184

4.757 ± 0.579

5.889 ± 1.786

6.002 ± 1.453

6.455 ± 1.274

7.361 ± 2.879

9.173 ± 0.605

2.605 ± 0.617

2.378 ± 0.53

4.87 ± 1.508
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski